Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 754644

Identification

Species:
Populus trichocarpa
Gene model
754644
Description
fgenesh4_pg.C_LG_II000824
Family
C2H2
3D structure (top 5)
2OU2 2OZU 1FY7 2P0W 2PQ8
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Populus trichocarpa

754644 Score: 1
559176 Score: 0.993

Populus trichocarpa

559176 Score: 1
754644 Score: 1

Expression data

Expressed Sequence Tags

At.28949
Arabidopsis thaliana histone acetyltransferase (At5g64610) mRNA, complete cds /cds=p(28,1365) /gb=AY099684
At.32464
Arabidopsis thaliana HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2); H3/H4 histone acetyltransferase/ nucleic acid binding / zinc ion binding (HAM2) mRNA, complete cds /cds=p(46,1383) /gb=NM_121011
Cre.19301
Chlamydomonas reinhardtii histone acetyltransferase (CHLREDRAFT_99077) mRNA, complete cds /cds=p(1,840) /gb=XM_001693571
Cre.3763
Chlamydomonas reinhardtii strain CC-503 cw92 mt+ /cds=p(238,1485) /gb=XM_001695705
Hv.4361
HVSMEb0001I14f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEb0001I14f, mRNA sequence /clone=HVSMEb0001I14f /gb=BF626860
Mtr.2162
N200676e rootphos(-) Medicago truncatula cDNA clone MHRP-20B4, mRNA sequence /clone=MHRP-20B4 /gb=AW329441
Pba.1766
WS02536.B21_H13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_H13 3', mRNA sequence /clone=WS02536_H13 /clone_end=3' /gb=DT488451
Ppa.19288
Physcomitrella patens subsp. patens histone acetyltransferase (HAM1501) mRNA, complete cds /cds=p(1,1215) /gb=XM_001754227
Ppa.9446
Physcomitrella patens subsp. patens histone acetyltransferase (HAM1502) mRNA, complete cds /cds=p(1,891) /gb=XM_001751187
Pth.15806
WS01213.BR_E01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01213_E01 5', mRNA sequence /clone=WS01213_E01 /clone_end=5' /gb=DT471283
Pth.1766
WS02536.B21_H13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_H13 3', mRNA sequence /clone=WS02536_H13 /clone_end=3' /gb=DT488451
Sbi.11081
DG1_6_C12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW677405
Sbi.6177
LG1_266_A12.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW283257
Vvi.16297
S1G02993 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G02993, mRNA sequence /clone=S1G02993 /gb=EE075691
Vvi.3525
VV_PEb13d09.b1 Vitis vinifera cv. perlette LibB Vitis vinifera cDNA, mRNA sequence /gb=EV234318

Domain Architecture

zf-C2H2 PF00096 754644
DomainStartEndBit scoreE-value
zf-C2H2163185180.036
MOZ_SAS187373480.81.7e-141

Sequences