Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 758729

Identification

Species:
Populus trichocarpa
Gene model
758729
Description
fgenesh4_pg.C_LG_IV000357
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os01g54550.1 Score: 1

Sorghum bicolor

5002569 Score: 1

Zea mays

GRMZM2G118453_P01 Score: 1

Expression data

Expressed Sequence Tags

At.1951
Arabidopsis thaliana AT4g18880/F13C5_50 mRNA, complete cds /cds=p(513,1718) /gb=AY125512
Mtr.1982
EST639110 MTUS Medicago truncatula cDNA clone MTUS-39G8, mRNA sequence /clone=MTUS-39G8 /gb=CA921392
Mtr.22152
NF106H11DT1F1094 Drought Medicago truncatula cDNA clone NF106H11DT 5', mRNA sequence /clone=NF106H11DT /clone_end=5' /gb=BF636270
Os.18587
Oryza sativa Japonica Group cDNA clone:J033067M16, full insert sequence /gb=AK101824
Os.59230
Oryza sativa Japonica Group cDNA clone:J013165J23, full insert sequence /gb=AK072210
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Ptp.7074
R034B08.3pR Populus root cDNA library Populus tremula x Populus tremuloides cDNA clone R034B08 3', mRNA sequence /clone=R034B08 /clone_end=3' /gb=DN488125
Vvi.23635
S9B09290 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B09290, mRNA sequence /clone=S9B09290 /gb=EE101448

Domain Architecture

HSF_DNA-bind PF00447 758729
DomainStartEndBit scoreE-value
HSF_DNA-bind12183226.56.1e-65

Sequences