Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 763241

Identification

Species:
Populus trichocarpa
Gene model
763241
Description
fgenesh4_pg.C_LG_VI001551
Family
C2H2
3D structure (top 5)
2DMD 2YT9 1UBD 2JP9 1A1H
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

478784 Score: 1

Arabidopsis thaliana

AT3G13810.1 Score: 1

Carica papaya

evm.TU.supercontig_25.50 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g09850.1 Score: 1
LOC_Os01g09850.2 Score: 1
LOC_Os01g09850.3 Score: 1

Physcomitrella patens

166815 Score: 1

Vitis vinifera

GSVIVP00032197001 Score: 1

Expression data

Expressed Sequence Tags

At.13356
Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds /cds=p(67,1875) /gb=AY056174
At.1592
Arabidopsis thaliana JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding (JKD) mRNA, complete cds /cds=p(206,1717) /gb=NM_120393
At.22283
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT3G45260) mRNA, complete cds /cds=p(149,1489) /gb=NM_114395
At.24519
Arabidopsis thaliana putative zinc finger protein (At1g14580) mRNA, complete cds /cds=p(256,1659) /gb=AY091041
At.27643
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT5G66730) mRNA, complete cds /cds=p(520,2022) /gb=NM_126071
At.28709
Arabidopsis thaliana ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD11) mRNA, complete cds /cds=p(452,1993) /gb=NM_112234
At.42516
Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-40-M12 /cds=p(74,1594) /gb=AK227837
At.50264
Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08 /cds=p(536,1894) /gb=AK226933
At.54100
Arabidopsis thaliana ATIDD12 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 12); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD12) mRNA, complete cds /cds=p(1,1209) /gb=NM_116501
At.8713
Arabidopsis thaliana NUC (NUTCRACKER); nucleic acid binding / transcription factor/ zinc ion binding (NUC) mRNA, complete cds /cds=p(151,1551) /gb=NM_123783
Hv.10030
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence /gb=AK250971
Mtr.7854
META909TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474771
Os.54518
Oryza sativa Japonica Group cDNA, clone: J100058I16, full insert sequence /gb=AK289209
Os.97953
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA204B21, full insert sequence /gb=CT832183
Ppa.18496
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_166815) mRNA, complete cds /cds=p(1,3060) /gb=XM_001770363
Ppa.2328
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168056) mRNA, complete cds /cds=p(1,3153) /gb=XM_001773598
Pth.8362
Populus trichocarpa clone WS01214_I21 unknown mRNA /cds=p(143,1456) /gb=EF146825

Domain Architecture

zf-C2H2 PF00096 763241
DomainStartEndBit scoreE-value
zf-C2H2729425.70.00017
zf-C2H214817020.60.0058

Sequences