Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 78045

Identification

Species:
Selaginella moellendorffii
Gene model
78045
Description
e_gw1.2.1408.1
Family
MYB-related
3D structure (top 5)
1IRZ 2YUM 2CU7 2IW5 2YUS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

324943 Score: 1

Arabidopsis thaliana

AT5G52660.1 Score: 1
AT5G52660.2 Score: 0.984

Carica papaya

evm.TU.supercontig_107.117 Score: 1

Coccomyxa sp. C-169

71086 Score: 1

Micromonas sp. RCC299

106228 Score: 1

Ostreococcus lucimarinus

6612 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g45670.1 Score: 1

Ostreococcus tauri

16627 Score: 1

Physcomitrella patens

24905 Score: 1

Populus trichocarpa

256693 Score: 1
289426 Score: 1

Sorghum bicolor

5061133 Score: 1

Vitis vinifera

GSVIVP00037734001 Score: 1

Zea mays

GRMZM2G000954_P04 Score: 1

Expression data

Expressed Sequence Tags

At.29606
Arabidopsis thaliana myb family transcription factor (AT5G52660) mRNA, complete cds /cds=p(124,1119) /gb=NM_124644
At.40072
Arabidopsis thaliana unknown protein (At3g09600) mRNA, complete cds /cds=p(45,941) /gb=AY091106
At.49839
Arabidopsis thaliana myb family transcription factor (AT1G01520) mRNA, complete cds /cds=p(1,864) /gb=NM_100034
Os.12484
Oryza sativa Japonica Group cDNA, clone: J075153L04, full insert sequence /gb=AK288059
Os.23936
Oryza sativa Japonica Group cDNA clone:002-130-F07, full insert sequence /cds=p(135,1031) /gb=AK119640
Pba.1173
WS01229.BR_N18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_N18 5', mRNA sequence /clone=WS01229_N18 /clone_end=5' /gb=DT473512
Pth.1173
WS01229.BR_N18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_N18 5', mRNA sequence /clone=WS01229_N18 /clone_end=5' /gb=DT473512
Vvi.22687
WIN061.C21_K13 Cab Sauv seed normalized (WIN06) Vitis vinifera cDNA clone WIN061_K13 3', mRNA sequence /clone=WIN061_K13 /clone_end=3' /gb=EC957082

Domain Architecture

Myb_DNA-binding PF00249 78045
DomainStartEndBit scoreE-value
Myb_DNA-binding267150.37.5e-12

Sequences