Plant Transcription factor database - Universität Potsdam

version: 3.0

Gene model: 783231

Identification

Species: Populus trichocarpa Gene model 783231 Description fgenesh4_pg.C_scaffold_86000091 Family zf-HD 3D structure (top 5) 1WH5 1WH7
	PDB entry:

Genome Databases

JGI/DOE

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

Ortholog identification by INPARANOID

Arabidopsis lyrata

888821 Score: 1

Arabidopsis thaliana

AT1G14440.1 Score: 1
AT1G14440.2 Score: 1

Populus trichocarpa

272189 Score: 1
276639 Score: 1
783231 Score: 1

Carica papaya

evm.TU.supercontig_173.5 Score: 1

Vitis vinifera

GSVIVP00035356001 Score: 1

Expression data

Expressed Sequence Tags

At.41972: Arabidopsis thaliana ATHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31); transcription factor (ATHB31) mRNA, complete cds /cds=p(387,1325) /gb=NM_101311
Os.76221: Oryza sativa Japonica Group cDNA, clone: J065133O18, full insert sequence /gb=AK287714
Vvi.19863: WIN0564.C21_O09 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0564_O09 3', mRNA sequence /clone=WIN0564_O09 /clone_end=3' /gb=EC955503

Domain Architecture

783231

Domain	Start	End	Bit score	E-value
ZF-HD_dimer	74	133	140.3	5.6e-39

Sequences

protein sequence
transcript sequence