Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 79899

Identification

Species:
Micromonas sp. RCC299
Gene model
79899
Description
e_gw2.03.436.1
Family
C3H
3D structure (top 5)
2D9N 2RHK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480442 Score: 1

Arabidopsis thaliana

AT2G20280.1 Score: 1

Chlorella sp. NC64A

134088 Score: 1

Carica papaya

evm.TU.supercontig_2216.1 Score: 1

Chlamydomonas reinhardtii

146239 Score: 1

Coccomyxa sp. C-169

63630 Score: 1

Micromonas pusilla CCMP1545

4866 Score: 1

Ostreococcus lucimarinus

38590 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g61830.1 Score: 1

Ostreococcus tauri

17276 Score: 1

Physcomitrella patens

24014 Score: 1

Populus trichocarpa

820289 Score: 1

Sorghum bicolor

4753849 Score: 1

Selaginella moellendorffii

80672 Score: 1

Vitis vinifera

GSVIVP00018279001 Score: 1

Zea mays

GRMZM2G032258_P01 Score: 1
GRMZM2G076521_P01 Score: 1
GRMZM2G096399_P01 Score: 1

Expression data

Expressed Sequence Tags

At.39718
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G20280) mRNA, complete cds /cds=p(1,1116) /gb=NM_127587
Cre.15550
Chlamydomonas reinhardtii predicted protein (CHLREDRAFT_146239) mRNA, complete cds /cds=p(1,1194) /gb=XM_001689400
Hv.5360
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88g07, mRNA sequence /gb=AK250766
Os.32086
Oryza sativa Japonica Group cDNA clone:J033050C24, full insert sequence /gb=AK101559
Vca.5590
CBHA10816.rev CBHA Volvox carteri f. nagariensis induced male 69-1b, 2kb neb notI Volvox carteri f. nagariensis cDNA clone CBHA10816 3', mRNA sequence /clone=CBHA10816 /clone_end=3' /gb=FD842318

Domain Architecture

zf-CCCH PF00642 79899
DomainStartEndBit scoreE-value
zf-CCCH118143250.0003

Sequences