Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 802380

Identification

Species:
Populus trichocarpa
Gene model
802380
Description
fgenesh4_pm.C_LG_VI000727
Family
C2C2-GATA
3D structure (top 5)
2VUT 4GAT 1GNF 2KAE 3DFX
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

491407 Score: 1

Arabidopsis thaliana

AT5G25830.1 Score: 1

Carica papaya

evm.TU.supercontig_78.7 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g54210.1 Score: 1

Physcomitrella patens

34911 Score: 1

Sorghum bicolor

4975775 Score: 1

Vitis vinifera

GSVIVP00032414001 Score: 1

Zea mays

GRMZM2G044576_P01 Score: 1

Expression data

Expressed Sequence Tags

At.30889
Arabidopsis thaliana zinc finger (GATA type) family protein (AT5G25830) mRNA, complete cds /cds=p(1,996) /gb=NM_122484
Pth.16215
V058C03.3pR Populus male catkins cDNA library Populus trichocarpa cDNA clone V058C03 3', mRNA sequence /clone=V058C03 /clone_end=3' /gb=DN492251
Vvi.15288
WIN0527.C21_D23 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0527_D23 3', mRNA sequence /clone=WIN0527_D23 /clone_end=3' /gb=EC942917
Vvi.23728
WIN0528.C21_J15 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0528_J15 3', mRNA sequence /clone=WIN0528_J15 /clone_end=3' /gb=EC943349

Domain Architecture

GATA PF00320 802380
DomainStartEndBit scoreE-value
GATA246281652.5e-16

Sequences