Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 8087

Identification

Species:
Ostreococcus lucimarinus
Gene model
8087
Description
gwEuk.3.624.1
Family
MYB-related
3D structure (top 5)
1GV2 2K9N 1H89 1H8A 1OFC
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

891746 Score: 1

Arabidopsis thaliana

AT1G49010.1 Score: 1

Carica papaya

evm.TU.supercontig_112.57 Score: 1

Chlamydomonas reinhardtii

338485 Score: 1

Coccomyxa sp. C-169

70912 Score: 1

Micromonas sp. RCC299

105391 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g34060.1 Score: 1

Ostreococcus tauri

23487 Score: 1

Physcomitrella patens

147199 Score: 1

Populus trichocarpa

218006 Score: 1
650862 Score: 1

Sorghum bicolor

5058138 Score: 1

Selaginella moellendorffii

47768 Score: 1

Vitis vinifera

GSVIVP00017631001 Score: 1

Zea mays

GRMZM2G149958_P01 Score: 1

Expression data

Expressed Sequence Tags

At.32952
Arabidopsis thaliana myb family transcription factor (AT5G05790) mRNA, complete cds /cds=p(358,1191) /gb=NM_120661
At.8762
Arabidopsis thaliana myb family transcription factor (AT5G08520) mRNA, complete cds /cds=p(622,1518) /gb=NM_120937
Cre.15384
Chlamydomonas reinhardtii predicted protein (CHLREDRAFT_165812) mRNA, complete cds /cds=p(1,2079) /gb=XM_001702456
Os.15338
Oryza sativa (japonica cultivar-group) transcription factor MYBS1 mRNA, complete cds /cds=p(20,940) /gb=AY151042
Os.15556
Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence /gb=AK106166
Os.18392
Oryza sativa Japonica Group cDNA clone:J013135D01, full insert sequence /cds=p(396,1343) /gb=AK068138
Os.42406
Oryza sativa Japonica Group cDNA clone:001-030-C10, full insert sequence /gb=AK111988
Ppa.8167
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_147199) mRNA, complete cds /cds=p(1,858) /gb=XM_001779294
Vvi.19568
WIN1138.C21_J18 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1138_J18 3', mRNA sequence /clone=WIN1138_J18 /clone_end=3' /gb=EC990110
Vvi.23727
sT7aVVM004H08026 VVM Vitis vinifera cDNA clone VVM004H08026 5' similar to emb_CAO48712.1 unnamed protein product [Vitis vinifera]. Expect = 2e-120, mRNA sequence /clone=VVM004H08026 /clone_end=5' /gb=FC062566

Domain Architecture

Myb_DNA-binding PF00249 8087
DomainStartEndBit scoreE-value
Myb_DNA-binding8913648.22.8e-11

Sequences