Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 811813

Identification

Species:
Populus trichocarpa
Gene model
811813
Description
fgenesh4_pm.C_scaffold_182000007
Family
TUB
3D structure (top 5)
3C5N 2FIM
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

892366 Score: 1

Arabidopsis thaliana

AT1G53320.1 Score: 1

Carica papaya

evm.TU.supercontig_77.11 Score: 1

Ostreococcus lucimarinus

44336 Score: 1

Populus trichocarpa

771727 Score: 1
811813 Score: 0.923

Oryza sativa subsp. japonica

LOC_Os05g43850.1 Score: 1

Sorghum bicolor

4853493 Score: 1

Zea mays

GRMZM2G068586_P01 Score: 1
GRMZM2G068586_P03 Score: 1
GRMZM2G134775_P01 Score: 1
GRMZM2G146519_P02 Score: 1
GRMZM2G146519_P03 Score: 1

Expression data

Expressed Sequence Tags

At.21504
Arabidopsis thaliana AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor (AtTLP2) mRNA, complete cds /cds=p(479,1663) /gb=NM_001036292
At.24299
Arabidopsis thaliana AtTLP7 (TUBBY LIKE PROTEIN 7); phosphoric diester hydrolase/ transcription factor (AtTLP7) mRNA, complete cds /cds=p(76,1215) /gb=NM_104210
At.27566
Arabidopsis thaliana putative tubby protein (At2g47900) mRNA, complete cds /cds=p(455,1675) /gb=AY074273
Hv.27670
RUS65E04w HF Hordeum vulgare subsp. vulgare cDNA clone HF11D17, mRNA sequence /clone=HF11D17 /gb=FD523604
Mtr.13388
META224TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474143
Os.10160
Oryza sativa (japonica cultivar-group) Os05g0514300 (Os05g0514300) mRNA, complete cds /cds=p(246,1364) /gb=NM_001062568
Os.21061
Oryza sativa (japonica cultivar-group) Os07g0667000 (Os07g0667000) mRNA, complete cds /cds=p(247,1467) /gb=NM_001067107
Os.22785
Oryza sativa Japonica Group cDNA clone:J023048A08, full insert sequence /cds=p(114,1184) /gb=AK070401
Os.31726
Oryza sativa Japonica Group cDNA clone:002-118-B03, full insert sequence /cds=p(68,1174) /gb=AK106853
Os.80328
Oryza sativa (japonica cultivar-group) Os05g0560400 (Os05g0560400) mRNA, complete cds /cds=p(1,1059) /gb=NM_001062843
Ppa.17533
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_190792) mRNA, complete cds /cds=p(1,1287) /gb=XM_001772550
Ppa.6953
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_221905) mRNA, complete cds /cds=p(1,1278) /gb=XM_001777454
Pth.11141
Populus trichocarpa clone WS01217_E07 unknown mRNA /cds=p(196,1374) /gb=EF146852
Pth.4669
Populus trichocarpa clone WS0115_J02 unknown mRNA /cds=p(226,1497) /gb=EF146106
Vvi.6639
WIN035.C21_E09 Cab Sauv seed normalized (WIN03) Vitis vinifera cDNA clone WIN035_E09 3', mRNA sequence /clone=WIN035_E09 /clone_end=3' /gb=EC928480

Domain Architecture

Tub PF01167 811813
DomainStartEndBit scoreE-value
Tub69326372.66.3e-109

Sequences