Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 81232

Identification

Species:
Coccomyxa sp. C-169
Gene model
81232
Description
estExt_fgeneshCV_pg.C_10424
Family
GNAT
3D structure (top 5)
2OB0 1TIQ 2I6C 1N71 2R7H
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

488201 Score: 1

Arabidopsis thaliana

AT5G13780.1 Score: 1

Cyanidioschyzon merolae

CMT358C Score: 1

Carica papaya

evm.TU.supercontig_125.51 Score: 1

Chlamydomonas reinhardtii

95444 Score: 1

Micromonas pusilla CCMP1545

20989 Score: 1

Micromonas sp. RCC299

73117 Score: 1

Ostreococcus lucimarinus

7944 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g54330.1 Score: 1
LOC_Os04g54330.2 Score: 1
LOC_Os04g54330.3 Score: 1

Ostreococcus tauri

25906 Score: 1

Physcomitrella patens

197972 Score: 1

Populus trichocarpa

641307 Score: 1
650021 Score: 1

Sorghum bicolor

4889237 Score: 1

Selaginella moellendorffii

58956 Score: 1

Vitis vinifera

GSVIVP00028699001 Score: 1

Zea mays

GRMZM2G016581_P01 Score: 1
GRMZM2G016581_P02 Score: 1
GRMZM2G016581_P03 Score: 1
GRMZM2G016581_P04 Score: 1
GRMZM2G016581_P05 Score: 1
GRMZM2G106245_P01 Score: 1
GRMZM2G106245_P02 Score: 1

Expression data

Expressed Sequence Tags

At.71754
047A06 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA sequence /gb=BU634859
At.9249
Arabidopsis thaliana GCN5-related N-acetyltransferase, putative (AT5G13780) mRNA, complete cds /cds=p(44,622) /gb=NM_121381
Cre.3592
1031055D11.y2 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas reinhardtii cDNA, mRNA sequence /gb=BI998203
Hv.2338
HVSMEl0014D11f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium infected) Hordeum vulgare subsp. vulgare cDNA clone HVSMEl0014D11f, mRNA sequence /clone=HVSMEl0014D11f /gb=BI949489
Mtr.13203
Medicago truncatula clone MTYF9_FA_FB_FC1G-D-13 unknown mRNA /cds=p(49,600) /gb=BT052143
Os.10971
Oryza sativa Japonica Group cDNA clone:002-186-C03, full insert sequence /cds=p(73,669) /gb=AK120021
Pba.3879
WS01125.BR_O17 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_O17 5', mRNA sequence /clone=WS01125_O17 /clone_end=5' /gb=DT497246
Ppa.23642
BJ944786 pphf full-length cDNA libary Physcomitrella patens subsp. patens cDNA clone pphf27d06 5', mRNA sequence /clone=pphf27d06 /clone_end=5' /gb=BJ944786
Ppa.686
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_197972) mRNA, complete cds /cds=p(172,711) /gb=XM_001781696
Pth.3879
Populus trichocarpa clone WS0118_J24 unknown mRNA /cds=p(77,673) /gb=EF146498
Sbi.5903
POL1_66_C06.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_66_C06_A002 5', mRNA sequence /clone=POL1_66_C06_A002 /clone_end=5' /gb=CF480570 /gi=34509439
Vca.4585
CBHA2606.fwd CBHA Volvox carteri f. nagariensis induced male 69-1b, 2kb neb notI Volvox carteri f. nagariensis cDNA clone CBHA2606 5', mRNA sequence /clone=CBHA2606 /clone_end=5' /gb=FD849524
Vvi.3014
C1G06320 Mixture of buds, little clusters and fruits (C1) Vitis vinifera cDNA clone C1G06320, mRNA sequence /clone=C1G06320 /gb=EE062740

Domain Architecture

Acetyltransf_1 PF00583 81232
DomainStartEndBit scoreE-value
Acetyltransf_14712962.31.8e-15

Sequences