Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 818400

Identification

Species:
Populus trichocarpa
Gene model
818400
Description
estExt_fgenesh4_pg.C_LG_V0535
Family
SET
3D structure (top 5)
2F69 2R3A 1H3I 3F9X 2RFI
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

481208 Score: 1

Populus trichocarpa

719252 Score: 1
818400 Score: 1

Cyanidioschyzon merolae

CMQ156C Score: 1

Micromonas sp. RCC299

63548 Score: 1

Selaginella moellendorffii

111860 Score: 1
446978 Score: 1

Populus trichocarpa

719252 Score: 1
818400 Score: 1

Vitis vinifera

GSVIVP00019523001 Score: 1

Expression data

Expressed Sequence Tags

At.22
Arabidopsis thaliana CLF (CURLY LEAF); transcription factor (CLF) mRNA, complete cds /cds=p(1,2709) /gb=NM_127902
Hv.20522
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf111g10, mRNA sequence /gb=AK251149
Os.44686
Oryza sativa (japonica cultivar-group) Os06g0275500 (Os06g0275500) mRNA, complete cds /cds=p(294,2984) /gb=NM_001063914
Os.96671
CI219033 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks after flowering and supermix Oryza sativa (japonica cultivar-group) cDNA clone 039-M068R-D12 3', mRNA sequence /clone=039-M068R-D12 /clone_end=3' /gb=CI219033
Pba.4886
WS02532.B21_C20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_C20 3', mRNA sequence /clone=WS02532_C20 /clone_end=3' /gb=DT486876
Ppa.1646
Physcomitrella patens subsp. patens polycomb group protein (SDG1501) mRNA, complete cds /cds=p(165,2843) /gb=XM_001768136
Pth.4886
WS02532.B21_C20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02532_C20 3', mRNA sequence /clone=WS02532_C20 /clone_end=3' /gb=DT486876
Pth.5102
WS0256.B21_F07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0256_F07 3', mRNA sequence /clone=WS0256_F07 /clone_end=3' /gb=CV245041
Sbi.7196
POL1_41_A10.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_41_A10_A002 5', mRNA sequence /clone=POL1_41_A10_A002 /clone_end=5' /gb=CF487051 /gi=34515920

Domain Architecture

SET PF00856 818400
DomainStartEndBit scoreE-value
SET7628901552.1e-43

Sequences