Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 819521

Identification

Species:
Populus trichocarpa
Gene model
819521
Description
estExt_fgenesh4_pg.C_LG_VI1603
Family
Sigma70-like
3D structure (top 5)
1L9Z 1RP3 1SIG 1L0O 2A6H
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

866812 Score: 1

Arabidopsis thaliana

AT3G53920.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g51150.1 Score: 1

Vitis vinifera

GSVIVP00032140001 Score: 1

Zea mays

GRMZM2G170480_P01 Score: 1
GRMZM2G170480_P02 Score: 1

Expression data

Expressed Sequence Tags

Ptp.10618
UL96TH02.5pR Populus cold stressed leaves cDNA library Populus tremula x Populus tremuloides cDNA clone UL96TH02 5', mRNA sequence /clone=UL96TH02 /clone_end=5' /gb=DN500871
Vvi.13669
WIN0535.C21_H19 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0535_H19 3', mRNA sequence /clone=WIN0535_H19 /clone_end=3' /gb=EC945680

Domain Architecture

Sigma70_r2 PF04542 819521
DomainStartEndBit scoreE-value
Sigma70_r232539569.21.4e-17
Sigma70_r339948158.22.9e-14
Sigma70_r449354670.94.2e-18

Sequences

protein sequence
transcript sequence