Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 820023

Identification

Species:
Populus trichocarpa
Gene model
820023
Description
estExt_fgenesh4_pg.C_LG_VII1056
Family
SNF2
3D structure (top 5)
2J0S 2FWR 1Z5Z 1FUU 3EIQ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

496925 Score: 1

Arabidopsis thaliana

AT5G66750.1 Score: 1

Carica papaya

evm.TU.supercontig_55.90 Score: 1

Micromonas sp. RCC299

58978 Score: 1

Ostreococcus lucimarinus

37662 Score: 1

Ostreococcus tauri

913 Score: 1

Vitis vinifera

GSVIVP00024954001 Score: 1

Expression data

Expressed Sequence Tags

At.28851
Arabidopsis thaliana CHR01/DDM1 (DECREASED DNA METHYLATION 1); helicase (CHR01/DDM1) mRNA, complete cds /cds=p(100,2394) /gb=NM_126073
Os.48755
Oryza sativa Japonica Group OsDDM1b mRNA for chromatin remodeling factor DDM1b, complete cds /cds=p(279,2828) /gb=AB177379
Os.6189
Oryza sativa Japonica Group OsDDM1a mRNA for chromatin remodeling factor DDM1a, complete cds /cds=p(134,2671) /gb=AB177378

Domain Architecture

SNF2_N PF00176 820023
DomainStartEndBit scoreE-value
SNF2_N187486382.56.5e-112
Helicase_C542621104.33.7e-28

Sequences

protein sequence
transcript sequence