Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 820699

Identification

Species:
Populus trichocarpa
Gene model
820699
Description
estExt_fgenesh4_pg.C_LG_VIII1211
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

876867 Score: 1

Arabidopsis thaliana

AT1G67970.1 Score: 1

Carica papaya

evm.TU.supercontig_2.158 Score: 1

Expression data

Expressed Sequence Tags

Mtr.10306
NF067D12STT1F110 Developing stem Medicago truncatula cDNA clone NF067D12ST 5', mRNA sequence /clone=NF067D12ST /clone_end=5' /gb=BQ137105
Mtr.22152
NF106H11DT1F1094 Drought Medicago truncatula cDNA clone NF106H11DT 5', mRNA sequence /clone=NF106H11DT /clone_end=5' /gb=BF636270
Os.9717
Oryza sativa Japonica Group cDNA clone:J023088F14, full insert sequence /cds=p(126,1646) /gb=AK100430
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pba.6450
WS02543.B21_C13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_C13 3', mRNA sequence /clone=WS02543_C13 /clone_end=3' /gb=DT489777
Pba.6727
WS02537.B21_N08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_N08 3', mRNA sequence /clone=WS02537_N08 /clone_end=3' /gb=DT488928
Pba.9383
WS01230.B21_L11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_L11 3', mRNA sequence /clone=WS01230_L11 /clone_end=3' /gb=DT476756
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.6450
WS02543.B21_C13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_C13 3', mRNA sequence /clone=WS02543_C13 /clone_end=3' /gb=DT489777
Pth.6727
WS02537.B21_N08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_N08 3', mRNA sequence /clone=WS02537_N08 /clone_end=3' /gb=DT488928
Pth.9383
Populus trichocarpa clone WS01230_L11 unknown mRNA /cds=p(80,1258) /gb=EF147413

Domain Architecture

HSF_DNA-bind PF00447 820699
DomainStartEndBit scoreE-value
HSF_DNA-bind10184218.61.5e-62

Sequences