Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 82285

Identification

Species:
Coccomyxa sp. C-169
Gene model
82285
Description
estExt_fgeneshCV_pg.C_50315
Family
ARID
3D structure (top 5)
1C20 1IG6 2JXJ 1KKX
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

484793 Score: 1

Arabidopsis thaliana

AT3G43240.1 Score: 1

Carica papaya

evm.TU.supercontig_82.49 Score: 1

Chlamydomonas reinhardtii

186244 Score: 1

Physcomitrella patens

741 Score: 1

Populus trichocarpa

260021 Score: 1

Sorghum bicolor

4748052 Score: 1

Selaginella moellendorffii

431374 Score: 1

Vitis vinifera

GSVIVP00034008001 Score: 1

Zea mays

GRMZM2G140156_P01 Score: 1
GRMZM2G093668_P01 Score: 0.945

Expression data

Expressed Sequence Tags

Mtr.11956
EST608595 GLSD Medicago truncatula cDNA clone pGLSD-30L12, mRNA sequence /clone=pGLSD-30L12 /gb=BQ123019
Mtr.9271
EST334404 DSIL Medicago truncatula cDNA clone pDSIL-1M15, mRNA sequence /clone=pDSIL-1M15 /gb=AW775339
Ppa.20791
Physcomitrella patens subsp. patens ARID/BRIGHT DNA-binding domain-containing protein (ARID1501) mRNA, partial cds /cds=p(1,1938) /gb=XM_001762145
Sbi.8042
RHOH1_28_H04.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_28_H04_A002 3', mRNA sequence /clone=RHOH1_28_H04_A002 /clone_end=3' /gb=CN128279 /gi=45955016
Vvi.20422
WIN0516.C21_N06 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0516_N06 3', mRNA sequence /clone=WIN0516_N06 /clone_end=3' /gb=EC937867

Domain Architecture

ARID PF01388 82285
DomainStartEndBit scoreE-value
ARID5386561.70.00012

Sequences