Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 827173

Identification

Species:
Populus trichocarpa
Gene model
827173
Description
estExt_fgenesh4_pg.C_640230
Family
C3H
3D structure (top 5)
3D2Q 2E5S 2RPP 3D2N 1M9O
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470353 Score: 1

Arabidopsis thaliana

AT1G03790.1 Score: 1

Vitis vinifera

GSVIVP00018620001 Score: 1

Expression data

Expressed Sequence Tags

At.12895
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G19810) mRNA, complete cds /cds=p(107,1186) /gb=NM_127539
At.23916
Arabidopsis thaliana ATCTH (Arabidopsis thaliana Cys3His zinc finger protein); transcription factor (ATCTH) mRNA, complete cds /cds=p(100,1047) /gb=NM_128150
At.23950
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G41900) mRNA, complete cds /cds=p(317,2467) /gb=NM_129754
At.43010
Arabidopsis thaliana At1g03790 mRNA for unknown protein, complete cds, clone: RAFL16-76-P06 /cds=p(65,1246) /gb=AK117219
At.4530
Arabidopsis thaliana unknown protein (At4g29190) mRNA, complete cds /cds=p(67,1137) /gb=AY045970
At.49189
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G58620) mRNA, complete cds /cds=p(236,2059) /gb=NM_125249
At.67031
AV530845 Arabidopsis thaliana flower buds Columbia Arabidopsis thaliana cDNA clone FB010d03F 3', mRNA sequence /clone=FB010d03F /clone_end=3' /gb=AV530845
Mtr.11645
NF111B08PL1F1073 Phosphate starved leaf Medicago truncatula cDNA clone NF111B08PL 5', mRNA sequence /clone=NF111B08PL /clone_end=5' /gb=BI264045
Mtr.14001
METAU86TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY476756
Os.20244
Oryza sativa Japonica Group cDNA clone:J023119N23, full insert sequence /cds=p(113,1273) /gb=AK100770
Os.31975
Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence /gb=AK106392
Pba.8688
WS02537.B21_I17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_I17 3', mRNA sequence /clone=WS02537_I17 /clone_end=3' /gb=DT488826
Pth.2984
Populus trichocarpa clone WS01121_A14 unknown mRNA /cds=p(146,2278) /gb=EF145149
Pth.8688
WS02537.B21_I17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_I17 3', mRNA sequence /clone=WS02537_I17 /clone_end=3' /gb=DT488826
Sbi.18549
PI1_57_C07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence /gb=BE596523

Domain Architecture

zf-CCCH PF00642 827173
DomainStartEndBit scoreE-value
zf-CCCH12014528.62.3e-05
zf-CCCH1551775.60.25

Sequences