Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 829302

Identification

Species:
Populus trichocarpa
Gene model
829302
Description
estExt_fgenesh4_pm.C_LG_I0043
Family
C3H
3D structure (top 5)
1M9O 2E5S 2CQE 3D2Q 2D9N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Carica papaya

evm.TU.supercontig_235.4 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g10080.1 Score: 1

Physcomitrella patens

182782 Score: 1

Sorghum bicolor

5054839 Score: 1

Vitis vinifera

GSVIVP00003737001 Score: 1

Zea mays

GRMZM2G110402_P02 Score: 1
GRMZM2G110402_P03 Score: 1
GRMZM2G151689_P01 Score: 1

Expression data

Expressed Sequence Tags

Hv.23774
BES1824108m17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010M178 5-PRIME, mRNA sequence /clone=MPMGp2010M17108 /clone_end=5' /gb=CK125503
Hv.5921
HVSMEn0010G12f Hordeum vulgare rachis EST library HVcDNA0015 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010G12f, mRNA sequence /clone=HVSMEn0010G12f /gb=BI957620
Hv.8868
HVSMEh0096D19f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEh0096D19f, mRNA sequence /clone=HVSMEh0096D19f /gb=BE455114
Hv.972
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf85e04, mRNA sequence /gb=AK250693
Mtr.17099
NF096C08EC1F1056 Elicited cell culture Medicago truncatula cDNA clone NF096C08EC 5', mRNA sequence /clone=NF096C08EC /clone_end=5' /gb=BF650769
Mtr.9024
MTGland_A018_2007-05-03/MTGlandA018_H06_017_1 Medicago truncatula A17 glandular trichome Medicago truncatula cDNA, mRNA sequence /gb=ES612328
Os.4265
Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence /cds=p(1178,2080) /gb=AK242341
Os.49688
Oryza sativa Japonica Group cDNA clone:J033145I17, full insert sequence /gb=AK103787
Os.5810
Oryza sativa Japonica Group cDNA clone:J033107K04, full insert sequence /cds=p(123,1052) /gb=AK121951
Pba.3196
WS02536.B21_J16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_J16 3', mRNA sequence /clone=WS02536_J16 /clone_end=3' /gb=DT488497
Pba.6053
WS02546.C21.1_E02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_E02 3', mRNA sequence /clone=WS02546_E02 /clone_end=3' /gb=DT490896
Ppa.9116
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_182782) mRNA, complete cds /cds=p(1,921) /gb=XM_001763099
Pth.3196
WS02536.B21_J16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_J16 3', mRNA sequence /clone=WS02536_J16 /clone_end=3' /gb=DT488497
Pth.6053
WS0255.B21_I04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0255_I04 3', mRNA sequence /clone=WS0255_I04 /clone_end=3' /gb=CV244748
Ptp.4334
T020C08 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU831332
Sbi.1446
OX1_53_C02.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_53_C02_A002 3', mRNA sequence /clone=OX1_53_C02_A002 /clone_end=3' /gb=CN136740 /gi=45969804
Vvi.13807
WIN1017.C21_C23 Muscat Hamburg post-veraison pericarp normalized (WIN10) Vitis vinifera cDNA clone WIN1017_C23 3', mRNA sequence /clone=WIN1017_C23 /clone_end=3' /gb=EC973909
Vvi.15871
WIN0813.C21_O23 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0813_O23 3', mRNA sequence /clone=WIN0813_O23 /clone_end=3' /gb=EC962242

Domain Architecture

zf-CCCH PF00642 829302
DomainStartEndBit scoreE-value
zf-CCCH3965190.0042
zf-CCCH10713328.62.3e-05
KH_118024253.66.9e-13
zf-CCCH271296408.4e-09

Sequences