Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 830643

Identification

Species:
Populus trichocarpa
Gene model
830643
Description
estExt_fgenesh4_pm.C_LG_III0039
Family
Alfin-like
3D structure (top 5)
1WEP 1WEE 2K16 2KGG 1WEU
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

904477 Score: 1

Arabidopsis thaliana

AT2G02470.1 Score: 1

Populus trichocarpa

830643 Score: 1
827481 Score: 0.923

Carica papaya

evm.TU.supercontig_1158.2 Score: 1

Populus trichocarpa

830643 Score: 1
827481 Score: 0.959

Coccomyxa sp. C-169

40531 Score: 1

Populus trichocarpa

830643 Score: 1
827481 Score: 0.956

Populus trichocarpa

830643 Score: 1
827481 Score: 0.964

Populus trichocarpa

830643 Score: 1
827481 Score: 0.965

Vitis vinifera

GSVIVP00035366001 Score: 1

Expression data

Expressed Sequence Tags

At.27212
Arabidopsis thaliana PHD finger family protein (AT3G42790) mRNA, complete cds /cds=p(164,916) /gb=NM_114147
At.27503
Arabidopsis thaliana PHD finger family protein (AT1G14510) mRNA, complete cds /cds=p(275,1033) /gb=NM_101318
At.43901
Arabidopsis thaliana PHD finger family protein (AT2G02470) mRNA, complete cds /cds=p(258,1028) /gb=NM_126302
At.68535
Arabidopsis thaliana PHD finger family protein (AT5G20510) mRNA, complete cds /cds=p(63,845) /gb=NM_122058
Hv.10448
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129c12, mRNA sequence /gb=AK251639
Hv.5712
HWM012cA.10r ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM012cA.10, mRNA sequence /clone=HWM012cA.10 /gb=BE421625
Mtr.10914
Medicago truncatula clone MTYF9_FA_FB_FC1G-I-4 unknown mRNA /cds=p(161,934) /gb=BT051954
Mtr.13758
EST669369 MTUS Medicago truncatula cDNA clone MTUS-10F11, mRNA sequence /clone=MTUS-10F11 /gb=CF068648
Mtr.7514
Medicago truncatula clone MTYFH_FI_FJ_FK1G-A-7 unknown mRNA /cds=m(170,940) /gb=BT052814
Os.17018
Oryza sativa Japonica Group cDNA clone:J033122M22, full insert sequence /cds=p(98,862) /gb=AK103215
Os.69757
Oryza sativa Japonica Group cDNA clone:J033046L10, full insert sequence /cds=p(85,888) /gb=AK073526
Os.9567
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA045I06, full insert sequence /gb=CT829243
Os.9944
Oryza sativa Japonica Group cDNA clone:001-119-B10, full insert sequence /cds=p(195,965) /gb=AK063657
Pba.5364
WS02552.C21_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02552_L07 3', mRNA sequence /clone=WS02552_L07 /clone_end=3' /gb=DT492870
Ppa.4847
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_214078) mRNA, complete cds /cds=p(539,1291) /gb=XM_001767826
Pth.7589
WS02552.C21_L07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02552_L07 3', mRNA sequence /clone=WS02552_L07 /clone_end=3' /gb=DT492870
Ptp.6746
X032E07 Populus wood cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU895888
Vvi.13554
WIN0416.C21_O21 Cab Sauv pericarp normalized (WIN04) Vitis vinifera cDNA clone WIN0416_O21 3', mRNA sequence /clone=WIN0416_O21 /clone_end=3' /gb=EC932630
Vvi.19056
WIN058.C21_B14 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN058_B14 3', mRNA sequence /clone=WIN058_B14 /clone_end=3' /gb=EC938930
Vvi.5438
WIN1112.C21_A06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1112_A06 3', mRNA sequence /clone=WIN1112_A06 /clone_end=3' /gb=EC981152

Domain Architecture

PHD PF00628 830643
DomainStartEndBit scoreE-value
PHD20025050.65.6e-12
Alfin-like201247122.32.2e-36

Sequences