Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 832516

Identification

Species:
Populus trichocarpa
Gene model
832516
Description
estExt_fgenesh4_pm.C_LG_VIII0151
Family
Pseudo ARR-B
3D structure (top 5)
1K66 1W25 2JBA 2RJN 2AYX
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

908143 Score: 1

Arabidopsis thaliana

AT5G02810.1 Score: 1

Carica papaya

evm.TU.supercontig_1.279 Score: 1

Micromonas pusilla CCMP1545

48139 Score: 1

Ostreococcus lucimarinus

29755 Score: 1
41670 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g17570.1 Score: 1
LOC_Os03g17570.2 Score: 1
LOC_Os03g17570.3 Score: 1
LOC_Os03g17570.4 Score: 0.926

Ostreococcus tauri

23022 Score: 1

Sorghum bicolor

5049663 Score: 1

Vitis vinifera

GSVIVP00029486001 Score: 1

Zea mays

GRMZM2G095727_P05 Score: 1
GRMZM2G095727_P04 Score: 0.922

Expression data

Expressed Sequence Tags

At.1676
Arabidopsis thaliana APRR3 (PSEUDO-RESPONSE REGULATOR 3); transcription regulator (APRR3) mRNA, complete cds /cds=p(397,1884) /gb=NM_125403
Os.12795
Oryza sativa Japonica Group cDNA clone:J013001E13, full insert sequence /gb=AK120059
Os.80771
Oryza sativa Japonica Group cDNA clone:J013102G21, full insert sequence /cds=p(267,2138) /gb=AK067314
Pba.1838
WS01229.B21_H11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H11 3', mRNA sequence /clone=WS01229_H11 /clone_end=3' /gb=DT476398
Pba.9585
WS01229.BR_H11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H11 5', mRNA sequence /clone=WS01229_H11 /clone_end=5' /gb=DT473373
Ppa.3166
Physcomitrella patens subsp. patens circadian clock protein PRR1 (PpPRR1) mRNA, partial cds /cds=p(1,1278) /gb=XM_001784561
Ppa.4916
Physcomitrella patens subsp. patens circadian clock protein PRR4 (PpPRR4) mRNA, complete cds /cds=p(1,3171) /gb=XM_001766053
Ppa.9703
Physcomitrella patens subsp. patens circadian clock protein PRR2 (PpPRR2) mRNA, complete cds /cds=p(1,3432) /gb=XM_001766050
Pth.15456
WS02518.B21_O19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02518_O19 3', mRNA sequence /clone=WS02518_O19 /clone_end=3' /gb=CV243453
Pth.16941
WS01229.BR_H11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H11 5', mRNA sequence /clone=WS01229_H11 /clone_end=5' /gb=DT473373
Ptp.1131
A075P10.3pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A075P10 3', mRNA sequence /clone=A075P10 /clone_end=3' /gb=CK088836
Sbi.10157
PIC1_53_A05.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence /gb=BM325806

Domain Architecture

Response_reg PF00072 832516
DomainStartEndBit scoreE-value
Response_reg37153102.71.1e-27
CCT65770183.19.2e-22

Sequences