Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 833761

Identification

Species:
Populus trichocarpa
Gene model
833761
Description
estExt_fgenesh4_pm.C_LG_X0729
Family
C3H
3D structure (top 5)
1YCS 3D9H 1OY3 2FO1 2BKG
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

486038 Score: 1

Arabidopsis thaliana

AT2G40140.1 Score: 1
AT2G40140.2 Score: 1

Populus trichocarpa

173205 Score: 1
833761 Score: 1

Micromonas pusilla CCMP1545

67715 Score: 1

Expression data

Expressed Sequence Tags

At.21697
Arabidopsis thaliana unknown protein (At3g55980) mRNA, complete cds /cds=p(170,1912) /gb=AY056282
At.27663
Arabidopsis thaliana CZF1/ZFAR1; transcription factor (CZF1/ZFAR1) mRNA, complete cds /cds=p(190,1983) /gb=NM_129572
At.49189
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT5G58620) mRNA, complete cds /cds=p(236,2059) /gb=NM_125249
Mtr.12130
EST646389 HOGA Medicago truncatula cDNA clone HOGA-28M8, mRNA sequence /clone=HOGA-28M8 /gb=CB893597
Pba.8906
WS01230.BR_D15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_D15 5', mRNA sequence /clone=WS01230_D15 /clone_end=5' /gb=DT473939
Pth.12545
WS01915.B21_F16 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01915_F16 3', mRNA sequence /clone=WS01915_F16 /clone_end=3' /gb=CV230075
Pth.8906
WS01230.BR_D15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_D15 5', mRNA sequence /clone=WS01230_D15 /clone_end=5' /gb=DT473939
Ptp.3203
N007B09 Populus bark cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU813256
Ptp.6284
N036H06 Populus bark cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU815078
Sbi.17965
LG1_292_E12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564424
Vvi.19078
VV_PEd01a07.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241477
Vvi.5592
VV_PEd0013h04.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV240679

Domain Architecture

Ank PF00023 833761
DomainStartEndBit scoreE-value
Ank7610918.90.018
Ank11114630.37e-06
zf-CCCH26228724.10.00052
zf-CCCH2973190.41.2

Sequences