Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 834586

Identification

Species:
Populus trichocarpa
Gene model
834586
Description
estExt_fgenesh4_pm.C_LG_XIII0293
Family
Sigma70-like
3D structure (top 5)
2A6H 1RP3 1SIG 1L0O 1L9Z
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470915 Score: 1

Populus trichocarpa

780378 Score: 1
834586 Score: 1

Populus trichocarpa

780378 Score: 1
834586 Score: 1

Arabidopsis thaliana

AT1G08540.1 Score: 1

Carica papaya

evm.TU.supercontig_73.28 Score: 1

Expression data

Expressed Sequence Tags

At.23349
Arabidopsis thaliana sigma factor 2 (SIG2) mRNA, nuclear gene encoding chloroplast protein, complete cds /cds=p(15,1739) /gb=AF015543
Hv.20577
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf170f11, mRNA sequence /gb=AK252843
Hv.27771
BJ481686 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves Hordeum vulgare subsp. spontaneum cDNA clone bah61h18 5', mRNA sequence /clone=bah61h18 /clone_end=5' /gb=BJ481686
Mtr.9120
EST457795 DSIL Medicago truncatula cDNA clone pDSIL-23E14, mRNA sequence /clone=pDSIL-23E14 /gb=BF520325
Os.28459
Oryza sativa Japonica Group cDNA clone:J013054G24, full insert sequence /gb=AK066099
Ptp.11516
C052P11.3pR Populus strain T89 leaves Populus tremula x Populus tremuloides cDNA clone C052P11 3', mRNA sequence /clone=C052P11 /clone_end=3' /gb=CK089965
Vvi.15436
WIN021.C21_B06 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN021_B06 3', mRNA sequence /clone=WIN021_B06 /clone_end=3' /gb=EC923412

Domain Architecture

Sigma70_r2 PF04542 834586
DomainStartEndBit scoreE-value
Sigma70_r233340386.67.8e-23
Sigma70_r340748987.34.7e-23
Sigma70_r450155488.22.7e-23

Sequences