Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 83958

Identification

Species:
Coccomyxa sp. C-169
Gene model
83958
Description
estExt_fgeneshCV_pg.C_160025
Family
SET
3D structure (top 5)
2H21
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

488263 Score: 1

Arabidopsis thaliana

AT5G14260.1 Score: 1
AT5G14260.2 Score: 1
AT5G14260.3 Score: 1

Cyanidioschyzon merolae

CMN207C Score: 1

Carica papaya

evm.TU.supercontig_130.11 Score: 1

Ostreococcus lucimarinus

2778 Score: 1

Oryza sativa subsp. japonica

LOC_Os12g13460.1 Score: 1

Physcomitrella patens

141673 Score: 1

Populus trichocarpa

585260 Score: 1

Sorghum bicolor

5036310 Score: 1

Selaginella moellendorffii

110000 Score: 1

Vitis vinifera

GSVIVP00020556001 Score: 1

Zea mays

GRMZM2G047695_P01 Score: 1

Expression data

Expressed Sequence Tags

At.28593
Arabidopsis thaliana SET domain-containing protein (AT5G14260) mRNA, complete cds /cds=p(149,1693) /gb=NM_180707
Hv.5742
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf3a05, mRNA sequence /gb=AK253114
Pba.7197
WS02533.BR_K23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_K23 5', mRNA sequence /clone=WS02533_K23 /clone_end=5' /gb=DT482032
Ppa.10744
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_209618) mRNA, complete cds /cds=p(75,1358) /gb=XM_001762516
Ppa.1495
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_141673) mRNA, complete cds /cds=p(1,1572) /gb=XM_001774713
Pth.7197
WS02533.BR_K23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_K23 5', mRNA sequence /clone=WS02533_K23 /clone_end=5' /gb=DT482032

Domain Architecture

SET PF00856 83958
DomainStartEndBit scoreE-value
SET21271377.4e-08
Rubis-subs-bind29441679.99.2e-21

Sequences