Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 865811

Identification

Species:
Arabidopsis lyrata
Gene model
865811
Description
Al_scaffold_0005_1290
Family
PHD
3D structure (top 5)
2RNO 1V66 2RNN
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Coccomyxa sp. C-169

83729 Score: 1

Physcomitrella patens

159935 Score: 1
163914 Score: 1
165698 Score: 1

Arabidopsis lyrata

496189 Score: 1
865811 Score: 1

Selaginella moellendorffii

93518 Score: 1

Vitis vinifera

GSVIVP00024500001 Score: 1

Expression data

Expressed Sequence Tags

At.43746
Arabidopsis thaliana SUMO E3 ligase (SIZ1) mRNA, complete cds /cds=p(240,2861) /gb=AY700572
Hv.17786
HO02A03S HO Hordeum vulgare cDNA clone HO02A03 5-PRIME, mRNA sequence /clone=HO02A03 /clone_end=5' /gb=CD054248
Mtr.12920
EST510425 HOGA Medicago truncatula cDNA clone pHOGA-23L12 5' end, mRNA sequence /clone=pHOGA-23L12 /clone_end=5' /gb=BG648806
Mtr.22469
EST645260 GPOD Medicago truncatula cDNA clone GPOD-34Z36, mRNA sequence /clone=GPOD-34Z36 /gb=CB066637
Os.4647
Oryza sativa Japonica Group cDNA clone:001-116-F09, full insert sequence /cds=p(251,2878) /gb=AK105290
Pth.2061
Q056A07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU873482
Sbi.11224
LG1_285_D12.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence /gb=AW564180

Domain Architecture

SAP PF02037 865811
DomainStartEndBit scoreE-value
SAP114539.21.6e-08
PHD11416835.91.6e-07
zf-MIZ35940889.41.3e-23

Sequences