Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 866812

Identification

Species:
Arabidopsis lyrata
Gene model
866812
Description
Al_scaffold_0005_2291
Family
Sigma70-like
3D structure (top 5)
1RP3 1SIG 1L0O 2A6H 1L9Z
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G53920.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g51150.1 Score: 1.002
LOC_Os05g51150.3 Score: 1

Populus trichocarpa

819521 Score: 1

Vitis vinifera

GSVIVP00032140001 Score: 1

Zea mays

GRMZM2G170480_P02 Score: 1
GRMZM2G170480_P01 Score: 0.903

Expression data

Expressed Sequence Tags

At.21270
Arabidopsis thaliana SIGC (RNA polymerase sigma subunit C); DNA binding / DNA-directed RNA polymerase/ transcription factor (SIGC) mRNA, complete cds /cds=p(130,1845) /gb=NM_115252
Vvi.13669
WIN0535.C21_H19 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0535_H19 3', mRNA sequence /clone=WIN0535_H19 /clone_end=3' /gb=EC945680

Domain Architecture

Sigma70_r2 PF04542 866812
DomainStartEndBit scoreE-value
Sigma70_r233340361.82.6e-15
Sigma70_r340749016.70.00058
Sigma70_r450255583.48.1e-22

Sequences