Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 868960

Identification

Species:
Arabidopsis lyrata
Gene model
868960
Description
Al_scaffold_0004_1123
Family
C3H
3D structure (top 5)
1UWV 3BT7 2JJQ 1WXX 1U2Z
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G28450.1 Score: 1

Carica papaya

evm.TU.supercontig_898.5 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g01480.1 Score: 1

Physcomitrella patens

138354 Score: 1

Populus trichocarpa

833322 Score: 1

Sorghum bicolor

5056910 Score: 1

Vitis vinifera

GSVIVP00024526001 Score: 1

Zea mays

GRMZM2G147623_P02 Score: 1

Expression data

Expressed Sequence Tags

At.44990
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G28450) mRNA, complete cds /cds=p(134,2563) /gb=NM_128405
Os.50217
Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence /gb=AK120156

Domain Architecture

zf-CCCH PF00642 868960
DomainStartEndBit scoreE-value
zf-CCCH7910539.81.1e-08

Sequences