Plant Transcription factor database - Universität Potsdam

version: 3.0

Gene model: 873852

Identification

Species: Arabidopsis lyrata Gene model 873852 Description Al_scaffold_0003_2493 Family Orphans 3D structure (top 5) 3D36 2C2A 2E0A 1GKZ 1BXD
	PDB entry:

Genome Databases

JGI/DOE

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G23150.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g08740.1 Score: 1
LOC_Os04g08740.2 Score: 1

Populus trichocarpa

566121 Score: 1

Sorghum bicolor

4887127 Score: 1

Vitis vinifera

GSVIVP00020174001 Score: 1

Zea mays

GRMZM2G089010_P02 Score: 1

Expression data

Expressed Sequence Tags

At.21286: Arabidopsis thaliana EIN4 (ETHYLENE INSENSITIVE 4); receptor (EIN4) mRNA, complete cds /cds=p(511,2811) /gb=NM_111329
At.43443: Arabidopsis thaliana mRNA for putative ethylene receptor ERS2, clone: RAFL16-43-O03 /gb=AK229151
At.43502: Arabidopsis thaliana ETR2 (ETHYLENE RESPONSE 2); receptor (ETR2) mRNA, complete cds /cds=p(397,2718) /gb=NM_113216

Domain Architecture

873852

Domain	Start	End	Bit score	E-value
GAF	187	329	48	3.6e-11
HisKA	365	430	35.1	2.8e-07
Response_reg	646	761	77	6.7e-20

Sequences

protein sequence
transcript sequence