Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 876867

Identification

Species:
Arabidopsis lyrata
Gene model
876867
Description
Al_scaffold_0002_1461
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G67970.1 Score: 1

Carica papaya

evm.TU.supercontig_2.158 Score: 1

Populus trichocarpa

820699 Score: 1

Vitis vinifera

GSVIVP00030611001 Score: 1

Expression data

Expressed Sequence Tags

At.5972
Arabidopsis thaliana AT-HSFA8 (Arabidopsis thaliana heat shock transcription factor A8); DNA binding / transcription factor (AT-HSFA8) mRNA, complete cds /cds=p(150,1274) /gb=NM_105467
Mtr.10306
NF067D12STT1F110 Developing stem Medicago truncatula cDNA clone NF067D12ST 5', mRNA sequence /clone=NF067D12ST /clone_end=5' /gb=BQ137105
Mtr.22152
NF106H11DT1F1094 Drought Medicago truncatula cDNA clone NF106H11DT 5', mRNA sequence /clone=NF106H11DT /clone_end=5' /gb=BF636270
Pba.6450
WS02543.B21_C13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_C13 3', mRNA sequence /clone=WS02543_C13 /clone_end=3' /gb=DT489777
Pth.6450
WS02543.B21_C13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_C13 3', mRNA sequence /clone=WS02543_C13 /clone_end=3' /gb=DT489777

Domain Architecture

HSF_DNA-bind PF00447 876867
DomainStartEndBit scoreE-value
HSF_DNA-bind17191210.54.3e-60

Sequences