Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 878662

Identification

Species:
Arabidopsis lyrata
Gene model
878662
Description
Al_scaffold_0001_429
Family
C3H
3D structure (top 5)
2D9N 1M9O 2E5S 2RHK 2CQE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G04990.1 Score: 1
AT1G04990.2 Score: 1

Carica papaya

evm.TU.supercontig_346.1 Score: 1

Populus trichocarpa

552730 Score: 1

Vitis vinifera

GSVIVP00025958001 Score: 1

Expression data

Expressed Sequence Tags

At.11296
Arabidopsis thaliana zinc finger protein 2 (zfn2) mRNA, complete cds /cds=p(1,1362) /gb=AF138744
At.21743
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT1G04990) mRNA, complete cds /cds=p(336,1550) /gb=NM_100378
Mtr.9480
EST484528 GVN Medicago truncatula cDNA clone pGVN-70P3 5' end, mRNA sequence /clone=pGVN-70P3 /clone_end=5' /gb=BG582782
Vvi.19281
WIN0543.C21_B18 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0543_B18 3', mRNA sequence /clone=WIN0543_B18 /clone_end=3' /gb=EC947915

Domain Architecture

zf-CCCH PF00642 878662
DomainStartEndBit scoreE-value
zf-CCCH487441.33.7e-09
zf-CCCH9111740.95e-09
zf-CCCH13616245.32.4e-10
zf-CCCH262288422.4e-09
zf-CCCH30833432.41.8e-06

Sequences