Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 880976

Identification

Species:
Arabidopsis lyrata
Gene model
880976
Description
Al_scaffold_0001_2743
Family
C2H2
3D structure (top 5)
2DLQ 2I13 1TF6 2JP9 1X6H
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G25250.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g36390.1 Score: 1

Vitis vinifera

GSVIVP00017892001 Score: 1

Zea mays

GRMZM2G123094_P02 Score: 1

Expression data

Expressed Sequence Tags

At.1592
Arabidopsis thaliana JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding (JKD) mRNA, complete cds /cds=p(206,1717) /gb=NM_120393
At.23507
Arabidopsis thaliana ATIDD14 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 14) (ATIDD14) mRNA, complete cds /cds=p(600,1601) /gb=NM_001084322
At.23909
Arabidopsis thaliana mRNA for adenylate translocator, complete cds, clone: RAFL07-94-L03 /cds=p(129,1274) /gb=AK226814
At.27643
Arabidopsis thaliana zinc finger (C2H2 type) family protein (AT5G66730) mRNA, complete cds /cds=p(520,2022) /gb=NM_126071
At.28709
Arabidopsis thaliana ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD11) mRNA, complete cds /cds=p(452,1993) /gb=NM_112234
At.37112
Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds /cds=p(91,1458) /gb=AY090998
At.42019
Arabidopsis thaliana ATIDD15/SGR5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, SHOOT GRAVITROPISM 5) (ATIDD15/SGR5) mRNA, complete cds /cds=p(378,1718) /gb=NM_001084399
At.50264
Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08 /cds=p(536,1894) /gb=AK226933
At.51762
Arabidopsis thaliana ATIDD16 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 16); nucleic acid binding / transcription factor/ zinc ion binding (ATIDD16) mRNA, complete cds /cds=p(1,1089) /gb=NM_102334
Hv.10030
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf100p19, mRNA sequence /gb=AK250971
Mtr.17317
NF078A11IN1F1085 Insect herbivory Medicago truncatula cDNA clone NF078A11IN 5', mRNA sequence /clone=NF078A11IN /clone_end=5' /gb=BI265111
Os.4648
Oryza sativa (japonica cultivar-group) Os01g0195000 (Os01g0195000) mRNA, complete cds /cds=p(472,1935) /gb=NM_001048823
Os.50005
Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence /gb=AK119595
Os.55091
Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence /gb=AK107468
Os.5733
Oryza sativa Japonica Group cDNA, clone: J090084I18, full insert sequence /gb=AK288964
Os.80098
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA005P05, full insert sequence /gb=CT837698
Ppa.18496
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_166815) mRNA, complete cds /cds=p(1,3060) /gb=XM_001770363
Ppa.2328
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_168056) mRNA, complete cds /cds=p(1,3153) /gb=XM_001773598
Pth.2108
Populus trichocarpa clone WS01227_A11 unknown mRNA /cds=p(18,1286) /gb=EF147067
Pth.559
Populus trichocarpa clone WS0122_O19 unknown mRNA /cds=p(1043,1366) /gb=EF147359

Domain Architecture

zf-C2H2 PF00096 880976
DomainStartEndBit scoreE-value
zf-C2H2628427.36.1e-05
zf-C2H214116322.10.0023

Sequences