Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 890588

Identification

Species:
Arabidopsis lyrata
Gene model
890588
Description
scaffold_103382.1
Family
C3H
3D structure (top 5)
2YU6 2YUD 2D9N 2RHK 2RPP
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G30460.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g46400.1 Score: 1

Populus trichocarpa

234849 Score: 1

Sorghum bicolor

5032111 Score: 1

Vitis vinifera

GSVIVP00028411001 Score: 1

Expression data

Expressed Sequence Tags

At.40546
Arabidopsis thaliana ATCPSF30/CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (ATCPSF30/CPSF30) mRNA, complete cds /cds=p(80,1975) /gb=NM_102782
Os.68827
Oryza sativa (japonica cultivar-group) Os06g0677700 (Os06g0677700) mRNA, complete cds /cds=p(1,1998) /gb=NM_001064894
Pba.9033
WS02527.BR_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_P13 5', mRNA sequence /clone=WS02527_P13 /clone_end=5' /gb=DT480115
Pth.9033
WS02527.BR_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02527_P13 5', mRNA sequence /clone=WS02527_P13 /clone_end=5' /gb=DT480115
Ptp.11159
A083P09.3pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A083P09 3', mRNA sequence /clone=A083P09 /clone_end=3' /gb=CK088987

Domain Architecture

zf-CCCH PF00642 890588
DomainStartEndBit scoreE-value
zf-CCCH618620.10.0034
zf-CCCH891149.50.086
zf-CCCH115140160.012
YTH281375153.56.5e-43

Sequences