Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 890808

Identification

Species:
Arabidopsis lyrata
Gene model
890808
Description
scaffold_103602.1
Family
C3H
3D structure (top 5)
1M9O 2E5S 3D2Q 3D2N 2D9M
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G32360.1 Score: 1

Carica papaya

evm.TU.supercontig_90.53 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g06330.1 Score: 1

Populus trichocarpa

554027 Score: 1

Sorghum bicolor

5007510 Score: 1

Selaginella moellendorffii

413367 Score: 1

Vitis vinifera

GSVIVP00015742001 Score: 1

Zea mays

GRMZM2G030795_P02 Score: 1
GRMZM2G030795_P04 Score: 1
GRMZM2G030795_P01 Score: 0.982
GRMZM2G030795_P03 Score: 0.982

Expression data

Expressed Sequence Tags

At.15521
Arabidopsis thaliana At1g32359/F27G20.10 mRNA, complete cds /cds=p(352,1506) /gb=AY056407
At.74086
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT1G32360) mRNA, complete cds /cds=p(395,1549) /gb=NM_102969
Os.48416
Oryza sativa (japonica cultivar-group) Os08g0159800 (Os08g0159800) mRNA, complete cds /cds=p(1,1104) /gb=NM_001067579
Pba.9203
WS02549.C21_B18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_B18 3', mRNA sequence /clone=WS02549_B18 /clone_end=3' /gb=DT491895
Pth.9203
WS02549.C21_B18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_B18 3', mRNA sequence /clone=WS02549_B18 /clone_end=3' /gb=DT491895
Sbi.11578
WS1_98_B06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence /gb=BE593461
Vvi.10057
WIN055.C21_E17 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN055_E17 3', mRNA sequence /clone=WIN055_E17 /clone_end=3' /gb=EC938008

Domain Architecture

zf-CCCH PF00642 890808
DomainStartEndBit scoreE-value
zf-CCCH9311829.71.2e-05
zf-CCCH17420025.40.00023
zf-CCCH26228848.23.1e-11

Sequences