Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 891479

Identification

Species:
Arabidopsis lyrata
Gene model
891479
Description
scaffold_104273.1
Family
HB
3D structure (top 5)
1AU7 3D1N 1E3O 2CUF 1LFB
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G46480.1 Score: 1

Carica papaya

evm.TU.supercontig_21.167 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g55590.1 Score: 1

Populus trichocarpa

836454 Score: 1
711025 Score: 0.902

Vitis vinifera

GSVIVP00014862001 Score: 1

Expression data

Expressed Sequence Tags

At.38691
Arabidopsis thaliana WOX4 mRNA, complete cds /cds=p(34,789) /gb=FJ440850
Mtr.5712
EST490397 MHRP- Medicago truncatula cDNA clone pMHRP-53N2, mRNA sequence /clone=pMHRP-53N2 /gb=BG588588
Pba.3037
WS01120.BR_O08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01120_O08 5', mRNA sequence /clone=WS01120_O08 /clone_end=5' /gb=DT495579
Pba.5048
WS01122.BR_M20 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01122_M20 5', mRNA sequence /clone=WS01122_M20 /clone_end=5' /gb=DT496227
Pth.16313
WS01122.BR_M20 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01122_M20 5', mRNA sequence /clone=WS01122_M20 /clone_end=5' /gb=DT496227
Pth.4419
WS01120.BR_O08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01120_O08 5', mRNA sequence /clone=WS01120_O08 /clone_end=5' /gb=DT495579
Vvi.14957
CGF1000819_E10 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0006_IVF_E10 5', mRNA sequence /clone=CAST0006_IVF_E10 /clone_end=5' /gb=CF214686

Domain Architecture

Homeobox PF00046 891479
DomainStartEndBit scoreE-value
Homeobox8714857.64.8e-14

Sequences