Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 892577

Identification

Species:
Arabidopsis lyrata
Gene model
892577
Description
scaffold_105371.1
Family
BSD
3D structure (top 5)
2DII 1PFJ
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G55750.1 Score: 1

Carica papaya

evm.TU.supercontig_181.6 Score: 1

Coccomyxa sp. C-169

76590 Score: 1

Micromonas pusilla CCMP1545

51857 Score: 1

Micromonas sp. RCC299

60505 Score: 1

Ostreococcus lucimarinus

18495 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g25060.1 Score: 1

Ostreococcus tauri

37417 Score: 1

Physcomitrella patens

152192 Score: 1

Populus trichocarpa

217093 Score: 1

Sorghum bicolor

4763410 Score: 1

Selaginella moellendorffii

422967 Score: 1

Vitis vinifera

GSVIVP00033473001 Score: 1

Zea mays

GRMZM2G090187_P02 Score: 1

Chlamydomonas reinhardtii

420943 Score: 1

Expression data

Expressed Sequence Tags

At.42907
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL06-88-F16 /cds=p(52,1827) /gb=AK226523
At.50300
Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL25-11-L24 /cds=p(1293,2027) /gb=AK176589
Hv.8926
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf175b18, mRNA sequence /gb=AK248433
Os.11028
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA224G03, full insert sequence /gb=CT829475
Vvi.12898
VV_PEd03d08.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241933

Domain Architecture

BSD PF03909 892577
DomainStartEndBit scoreE-value
BSD11117246.78.8e-11
BSD18824964.93e-16

Sequences