Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 895721

Identification

Species:
Arabidopsis lyrata
Gene model
895721
Description
scaffold_202795.1
Family
Jumonji
3D structure (top 5)
1VRB 2YU1 3D8C 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G78280.1 Score: 1

Carica papaya

evm.TU.supercontig_36.160 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g27250.1 Score: 1

Physcomitrella patens

139046 Score: 1

Sorghum bicolor

4870547 Score: 1

Selaginella moellendorffii

406902 Score: 1

Vitis vinifera

GSVIVP00015195001 Score: 1

Zea mays

GRMZM2G152877_P01 Score: 1

Expression data

Expressed Sequence Tags

At.48390
Arabidopsis thaliana transcription factor jumonji (jmjC) domain-containing protein (AT1G78280) mRNA, complete cds /cds=p(269,3019) /gb=NM_106477
Hv.18772
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf104j02, mRNA sequence /gb=AK251035
Hv.26788
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf133n11, mRNA sequence /gb=AK251910

Domain Architecture

F-box PF00646 895721
DomainStartEndBit scoreE-value
F-box156229.51.4e-05
JmjC24936232.99.5e-07

Sequences