Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 897508

Identification

Species:
Arabidopsis lyrata
Gene model
897508
Description
scaffold_301478.1
Family
NAC
3D structure (top 5)
1UT7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G12977.1 Score: 1

Vitis vinifera

GSVIVP00025798001 Score: 1

Expression data

Expressed Sequence Tags

At.48312
Arabidopsis thaliana NAC1 (Arabidopsis NAC domain containing protein 21, Arabidopsis NAC domain containing protein 22); transcription factor (NAC1) mRNA, complete cds /cds=p(138,1112) /gb=NM_104479
At.53370
47-L020254-065-002-G06-SeLA MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 002-G06, mRNA sequence /clone=002-G06 /gb=DR750602
At.5743
Arabidopsis thaliana CUC1 (CUP-SHAPED COTYLEDON1); transcription factor (CUC1) mRNA, complete cds /cds=p(30,962) /gb=NM_112380
Hv.21779
Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (nac1 gene) /cds=p(361,1275) /gb=AM500855
Mtr.3392
EST1226653 MTY Medicago truncatula cDNA clone MTYAW81, mRNA sequence /clone=MTYAW81 /gb=DW017692
Os.18414
Oryza sativa (japonica cultivar-group) Os06g0344900 (Os06g0344900) mRNA, complete cds /cds=p(1,1122) /gb=NM_001064113
Os.51762
Oryza sativa Japonica Group cDNA clone:001-119-A03, full insert sequence /cds=p(287,1201) /gb=AK063648
Os.53228
Oryza sativa Japonica Group cDNA clone:J023097O13, full insert sequence /gb=AK071464
Os.7235
Oryza sativa Japonica Group cDNA clone:J013046E14, full insert sequence /cds=p(181,1257) /gb=AK065989
Os.7362
Oryza sativa Japonica Group cDNA clone:J033072L16, full insert sequence /cds=p(191,1096) /gb=AK073876
Ptp.4986
I018P65P Populus leaf cDNA library Populus tremula x Populus tremuloides cDNA, mRNA sequence /gb=BI123181
Sbi.2198
ETH1_14_G07.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_14_G07_A002 5', mRNA sequence /clone=ETH1_14_G07_A002 /clone_end=5' /gb=CD429611 /gi=31345254
Sbi.7063
ANR1_2_E11.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_2_E11_A002 5', mRNA sequence /clone=ANR1_2_E11_A002 /clone_end=5' /gb=CX606383 /gi=57803843
Vvi.2352
S7B00671 Berries 14mm with GA3 (VvS7) Vitis vinifera cDNA clone S7B00671, mRNA sequence /clone=S7B00671 /gb=EE093464

Domain Architecture

NAM PF02365 897508
DomainStartEndBit scoreE-value
NAM18144255.11.7e-73

Sequences