Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 900468

Identification

Species:
Arabidopsis lyrata
Gene model
900468
Description
scaffold_304438.1
Family
AP2-EREBP
3D structure (top 5)
1GCC
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G20880.1 Score: 1

Carica papaya

evm.TU.supercontig_34.129 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g44670.1 Score: 1

Sorghum bicolor

5042232 Score: 1

Vitis vinifera

GSVIVP00027632001 Score: 1

Expression data

Expressed Sequence Tags

At.27216
Arabidopsis thaliana AP2 domain-containing transcription factor, putative (AT2G20880) mRNA, complete cds /cds=p(81,1091) /gb=NM_127658
At.32043
Arabidopsis thaliana transcription factor QRAP2 (QRAP2) mRNA, complete cds /cds=p(126,1004) /gb=DQ011579
Os.81053
Oryza sativa (japonica cultivar-group) Os04g0529100 (Os04g0529100) mRNA, complete cds /cds=p(96,1229) /gb=NM_001059914
Pba.3766
WS0255.B21_E08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0255_E08 3', mRNA sequence /clone=WS0255_E08 /clone_end=3' /gb=CV244661

Domain Architecture

AP2 PF00847 900468
DomainStartEndBit scoreE-value
AP2176227814.4e-21

Sequences