Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 902198

Identification

Species:
Arabidopsis lyrata
Gene model
902198
Description
scaffold_401699.1
Family
SET
3D structure (top 5)
2RFI 3F9X 1H3I 2W5Y 3H6L
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G31650.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g04890.1 Score: 1

Physcomitrella patens

197069 Score: 1

Populus trichocarpa

246366 Score: 1
755956 Score: 1

Arabidopsis lyrata

311665 Score: 1
902198 Score: 1

Sorghum bicolor

4789006 Score: 1

Selaginella moellendorffii

445108 Score: 1

Vitis vinifera

GSVIVP00005671001 Score: 1

Zea mays

GRMZM2G013794_P01 Score: 1

Expression data

Expressed Sequence Tags

At.14356
Arabidopsis thaliana ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding (ATX1) mRNA, complete cds /cds=p(1,3189) /gb=NM_179839
At.46306
Arabidopsis thaliana mRNA for tri-thorax like protein, clone: RAFL07-12-E24 /gb=AK226560
Hv.15798
HVSMEl0010L24f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium infected) Hordeum vulgare subsp. vulgare cDNA clone HVSMEl0010L24f, mRNA sequence /clone=HVSMEl0010L24f /gb=BI948766
Os.7059
Oryza sativa Japonica Group cDNA clone:J033074A15, full insert sequence /cds=p(186,3254) /gb=AK074022
Pba.7487
WS02530.B21_M18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_M18 3', mRNA sequence /clone=WS02530_M18 /clone_end=3' /gb=DT486369
Pth.7487
WS02530.B21_M18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_M18 3', mRNA sequence /clone=WS02530_M18 /clone_end=3' /gb=DT486369

Domain Architecture

PWWP PF00855 902198
DomainStartEndBit scoreE-value
PWWP29837444.44.5e-10
FYRN44549879.71e-20
FYRC50359194.63.4e-25
SET8971027169.97.2e-48

Sequences