Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 902613

Identification

Species:
Arabidopsis lyrata
Gene model
902613
Description
scaffold_402114.1
Family
SET
3D structure (top 5)
2PB7 2R3A 1ML9 2RFI 1MVH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G35160.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g45990.1 Score: 1

Populus trichocarpa

264791 Score: 1

Sorghum bicolor

4874383 Score: 1

Vitis vinifera

GSVIVP00013493001 Score: 1

Arabidopsis lyrata

868053 Score: 1
902613 Score: 1

Zea mays

GRMZM2G001103_P01 Score: 1
GRMZM2G001103_P02 Score: 1
GRMZM2G124729_P01 Score: 1
GRMZM2G124729_P02 Score: 1

Expression data

Expressed Sequence Tags

At.12724
Arabidopsis thaliana putative SET-domain protein (At2g35160; T4C15.17) mRNA, complete cds /cds=p(198,2582) /gb=AY062735
At.28511
Arabidopsis thaliana putative mammalian MHC III region protein G9a (At2g22740) mRNA, complete cds /cds=p(113,2485) /gb=AY065374
Os.52449
Oryza sativa Japonica Group cDNA clone:J013096C06, full insert sequence /gb=AK067187

Domain Architecture

YDG_SRA PF02182 902613
DomainStartEndBit scoreE-value
YDG_SRA367526335.88.4e-98
Pre-SET550647152.51.3e-42
SET649779189.87.4e-54

Sequences