Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 904137

Identification

Species:
Arabidopsis lyrata
Gene model
904137
Description
scaffold_403638.1
Family
HB
3D structure (top 5)
2HDD 1B8I 2CRA 1IG7 1NK2
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

904137 Score: 1
904139 Score: 1

Arabidopsis thaliana

AT2G46680.1 Score: 1

Populus trichocarpa

572441 Score: 1
799128 Score: 1

Arabidopsis lyrata

904137 Score: 1
904139 Score: 1

Arabidopsis lyrata

904137 Score: 1
904139 Score: 1

Vitis vinifera

GSVIVP00026135001 Score: 1

Expression data

Expressed Sequence Tags

At.136
Arabidopsis thaliana ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7); transcription factor (ATHB-7) mRNA, complete cds /cds=p(177,953) /gb=NM_130233
At.25517
Arabidopsis thaliana ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 12); transcription factor (ATHB-12) mRNA, complete cds /cds=p(87,794) /gb=NM_116054
Mtr.12349
METAI06TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY475591
Pba.9224
WS02519.BR_K18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_K18 5', mRNA sequence /clone=WS02519_K18 /clone_end=5' /gb=DT477340
Pth.9224
M125D02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU869042

Domain Architecture

Homeobox PF00046 904137
DomainStartEndBit scoreE-value
Homeobox308666.59.9e-17
HALZ8713141.72.9e-09

Sequences