Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 904477

Identification

Species:
Arabidopsis lyrata
Gene model
904477
Description
scaffold_500181.1
Family
Alfin-like
3D structure (top 5)
1WEP 2K16 2RI7 1WE9 1WEE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT2G02470.1 Score: 1

Populus trichocarpa

830643 Score: 1

Sorghum bicolor

5009668 Score: 1

Vitis vinifera

GSVIVP00035366001 Score: 1

Arabidopsis lyrata

471625 Score: 1
904477 Score: 1

Zea mays

GRMZM2G107807_P01 Score: 1.007
GRMZM2G063864_P01 Score: 1
GRMZM2G115424_P03 Score: 1
GRMZM2G107807_P02 Score: 0.965

Expression data

Expressed Sequence Tags

At.27212
Arabidopsis thaliana PHD finger family protein (AT3G42790) mRNA, complete cds /cds=p(164,916) /gb=NM_114147
At.27503
Arabidopsis thaliana PHD finger family protein (AT1G14510) mRNA, complete cds /cds=p(275,1033) /gb=NM_101318
At.43901
Arabidopsis thaliana PHD finger family protein (AT2G02470) mRNA, complete cds /cds=p(258,1028) /gb=NM_126302
At.68535
Arabidopsis thaliana PHD finger family protein (AT5G20510) mRNA, complete cds /cds=p(63,845) /gb=NM_122058
Hv.10448
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129c12, mRNA sequence /gb=AK251639
Hv.10724
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf62e08, mRNA sequence /gb=AK250191
Hv.5712
HWM012cA.10r ITEC HWM Barley Leaf Library Hordeum vulgare subsp. vulgare cDNA clone HWM012cA.10, mRNA sequence /clone=HWM012cA.10 /gb=BE421625
Mtr.10914
Medicago truncatula clone MTYF9_FA_FB_FC1G-I-4 unknown mRNA /cds=p(161,934) /gb=BT051954
Mtr.13758
EST669369 MTUS Medicago truncatula cDNA clone MTUS-10F11, mRNA sequence /clone=MTUS-10F11 /gb=CF068648
Mtr.7514
Medicago truncatula clone MTYFH_FI_FJ_FK1G-A-7 unknown mRNA /cds=m(170,940) /gb=BT052814
Os.17018
Oryza sativa Japonica Group cDNA clone:J033122M22, full insert sequence /cds=p(98,862) /gb=AK103215
Os.2294
Oryza sativa (japonica cultivar-group) Os01g0887700 (Os01g0887700) mRNA, complete cds /cds=p(225,1043) /gb=NM_001051571
Os.69757
Oryza sativa Japonica Group cDNA clone:J033046L10, full insert sequence /cds=p(85,888) /gb=AK073526
Os.9567
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA045I06, full insert sequence /gb=CT829243
Os.9870
Oryza sativa Japonica Group cDNA clone:001-104-H11, full insert sequence /cds=p(76,912) /gb=AK109447
Os.9944
Oryza sativa Japonica Group cDNA clone:001-119-B10, full insert sequence /cds=p(195,965) /gb=AK063657
Ppa.4847
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_214078) mRNA, complete cds /cds=p(539,1291) /gb=XM_001767826
Vvi.13554
WIN0416.C21_O21 Cab Sauv pericarp normalized (WIN04) Vitis vinifera cDNA clone WIN0416_O21 3', mRNA sequence /clone=WIN0416_O21 /clone_end=3' /gb=EC932630
Vvi.19056
WIN058.C21_B14 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN058_B14 3', mRNA sequence /clone=WIN058_B14 /clone_end=3' /gb=EC938930
Vvi.5438
WIN1112.C21_A06 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1112_A06 3', mRNA sequence /clone=WIN1112_A06 /clone_end=3' /gb=EC981152

Domain Architecture

Alfin-like Alfin-like 904477
DomainStartEndBit scoreE-value
PHD20025054.15.2e-13
Alfin-like201247121.83.3e-36

Sequences