Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 905943

Identification

Species:
Arabidopsis lyrata
Gene model
905943
Description
scaffold_501647.1
Family
C3H
3D structure (top 5)
1X5U 2DGP 1NO8 2CQI 2YWK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G47120.1 Score: 1

Carica papaya

evm.TU.supercontig_112.32 Score: 1

Physcomitrella patens

204377 Score: 1

Arabidopsis lyrata

358097 Score: 1
905943 Score: 1

Sorghum bicolor

4963681 Score: 1

Zea mays

GRMZM2G123876_P01 Score: 1

Expression data

Expressed Sequence Tags

At.35841
Arabidopsis thaliana RNA recognition motif (RRM)-containing protein (AT3G47120) mRNA, complete cds /cds=p(54,1112) /gb=NM_114579
Mtr.18302
AC2910 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY617186
Os.74634
Oryza sativa Japonica Group cDNA clone:J023095J08, full insert sequence /gb=AK071472
Ppa.24354
CAYZ34318.fwd CAYZ Physcomitrella patens subsp. patens Villersexel - regular (L) Physcomitrella patens subsp. patens cDNA clone CAYZ34318 5', mRNA sequence /clone=CAYZ34318 /clone_end=5' /gb=FC416455
Vvi.23026
sT7aVVM006N06019 VVM Vitis vinifera cDNA clone VVM006N06019 5' similar to emb_CAO21476.1 unnamed protein product [Vitis vinifera]. Expect = 3e-99, mRNA sequence /clone=VVM006N06019 /clone_end=5' /gb=FC063379

Domain Architecture

RRM_1 PF00076 905943
DomainStartEndBit scoreE-value
RRM_13810893.85.9e-25
zf-CCCH13115633.21.1e-06

Sequences