Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 906461

Identification

Species:
Arabidopsis lyrata
Gene model
906461
Description
scaffold_502165.1
Family
C3H
3D structure (top 5)
2BZE 1V32 1WH2 2Z5S 1UHR
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G51120.1 Score: 1

Carica papaya

evm.TU.supercontig_6.209 Score: 1

Populus trichocarpa

219537 Score: 1

Sorghum bicolor

5009677 Score: 1

Vitis vinifera

GSVIVP00035957001 Score: 1

Zea mays

GRMZM2G078379_P01 Score: 1

Expression data

Expressed Sequence Tags

At.858
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT3G51120) mRNA, complete cds /cds=p(310,4002) /gb=NM_114972
Hv.25150
BJ471970 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal28n18 5', mRNA sequence /clone=baal28n18 /clone_end=5' /gb=BJ471970
Mtr.13307
EST647475 HOGA Medicago truncatula cDNA clone HOGA-32C15, mRNA sequence /clone=HOGA-32C15 /gb=CB894683
Os.78568
Oryza sativa (japonica cultivar-group) Os10g0511800 (Os10g0511800) mRNA, complete cds /cds=p(1,2118) /gb=NM_001071576
Os.86087
NEW_RNG123-D03 Rice mixture of leaf, root, panicle Oryza sativa (japonica cultivar-group) cDNA, mRNA sequence /gb=EE590805

Domain Architecture

AT_hook PF02178 906461
DomainStartEndBit scoreE-value
AT_hook799111.60.26
SWIB320395100.17.6e-27
Plus-34575641761.1e-49
GYF71777225.40.00023
zf-CCCH1268129328.23.3e-05

Sequences