Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 907942

Identification

Species:
Arabidopsis lyrata
Gene model
907942
Description
scaffold_503646.1
Family
C3H
3D structure (top 5)
2D9N 2RHK 2E5S 2CQE 2RPP
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Micromonas pusilla CCMP1545

13206 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g21390.1 Score: 1
LOC_Os06g21390.2 Score: 1
LOC_Os06g21390.3 Score: 0.924

Ostreococcus tauri

31899 Score: 1

Physcomitrella patens

139138 Score: 1

Arabidopsis lyrata

478149 Score: 1
907942 Score: 1

Populus trichocarpa

706432 Score: 1

Sorghum bicolor

4770553 Score: 1

Selaginella moellendorffii

110501 Score: 1

Arabidopsis lyrata

478149 Score: 1
907942 Score: 1

Chlamydomonas reinhardtii

105687 Score: 1

Arabidopsis lyrata

478149 Score: 1
907942 Score: 1

Expression data

Expressed Sequence Tags

At.28383
Arabidopsis thaliana zinc finger (CCCH-type/C3HC4-type RING finger) family protein (AT3G08505) mRNA, complete cds /cds=p(87,1058) /gb=NM_202526
At.71511
AYBGF12TF pooled cDNA populations Arabidopsis thaliana cDNA, mRNA sequence /gb=EG499496
Hv.5250
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156g01, mRNA sequence /gb=AK248188
Mtr.4682
MTYEX04TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV262541
Os.26343
Oryza sativa Japonica Group cDNA clone:J013045F22, full insert sequence /cds=p(224,1330) /gb=AK120250
Ppa.21711
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_139138) mRNA, partial cds /cds=p(1,975) /gb=XM_001772688
Pth.17392
Populus trichocarpa clone PX0011_J15 unknown mRNA /cds=p(416,745) /gb=EF144239
Vvi.12304
C2B01083 Buds/little clusters (VvC2) Vitis vinifera cDNA clone C2B01083, mRNA sequence /clone=C2B01083 /gb=EE063910

Domain Architecture

zf-CCCH PF00642 907942
DomainStartEndBit scoreE-value
zf-CCCH22719.10.0045
zf-CCCH305531.63.2e-06
zf-CCCH13315823.20.0011
zf-C3HC420125830.56.6e-06
zf-CCCH2893166.30.23

Sequences