Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 908143

Identification

Species:
Arabidopsis lyrata
Gene model
908143
Description
scaffold_600200.1
Family
Pseudo ARR-B
3D structure (top 5)
1K66 1W25 2JBA 2RJN 2AYX
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G02810.1 Score: 1

Carica papaya

evm.TU.supercontig_1.279 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g17570.1 Score: 1
LOC_Os03g17570.2 Score: 1
LOC_Os03g17570.3 Score: 1
LOC_Os03g17570.4 Score: 0.937

Ostreococcus tauri

23022 Score: 1

Physcomitrella patens

165025 Score: 1

Populus trichocarpa

832516 Score: 1

Sorghum bicolor

5049663 Score: 1

Vitis vinifera

GSVIVP00024444001 Score: 1

Zea mays

GRMZM2G095727_P05 Score: 1
GRMZM2G095727_P04 Score: 0.932

Expression data

Expressed Sequence Tags

At.1676
Arabidopsis thaliana APRR3 (PSEUDO-RESPONSE REGULATOR 3); transcription regulator (APRR3) mRNA, complete cds /cds=p(397,1884) /gb=NM_125403
At.20552
Arabidopsis thaliana PRR7 (PSEUDO-RESPONSE REGULATOR 7); transcription regulator (PRR7) mRNA, complete cds /cds=p(262,2445) /gb=NM_120359
Pba.9585
WS01229.BR_H11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H11 5', mRNA sequence /clone=WS01229_H11 /clone_end=5' /gb=DT473373
Ppa.3166
Physcomitrella patens subsp. patens circadian clock protein PRR1 (PpPRR1) mRNA, partial cds /cds=p(1,1278) /gb=XM_001784561
Ppa.9703
Physcomitrella patens subsp. patens circadian clock protein PRR2 (PpPRR2) mRNA, complete cds /cds=p(1,3432) /gb=XM_001766050
Pth.16941
WS01229.BR_H11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H11 5', mRNA sequence /clone=WS01229_H11 /clone_end=5' /gb=DT473373
Vvi.16575
WIN1138.C21_C23 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1138_C23 3', mRNA sequence /clone=WIN1138_C23 /clone_end=3' /gb=EC989969

Domain Architecture

Response_reg PF00072 908143
DomainStartEndBit scoreE-value
Response_reg8720183.47.9e-22
CCT67571980.65.6e-21

Sequences