Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 908246

Identification

Species:
Arabidopsis lyrata
Gene model
908246
Description
scaffold_600303.1
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G03720.1 Score: 1

Cyanidioschyzon merolae

CML277C Score: 1

Oryza sativa subsp. japonica

LOC_Os02g32590.2 Score: 1
LOC_Os02g32590.1 Score: 0.96

Vitis vinifera

GSVIVP00021673001 Score: 1

Expression data

Expressed Sequence Tags

At.45813
Arabidopsis thaliana AT-HSFA3 (Arabidopsis thaliana heat shock transcription factor A3); DNA binding / transcription factor (AT-HSFA3) mRNA, complete cds /cds=p(1,1239) /gb=NM_120453
Os.23778
Oryza sativa Japonica Group cDNA clone:J033073P11, full insert sequence /cds=p(81,1577) /gb=AK101934
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Ppa.23110
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_108327) mRNA, complete cds /cds=p(1,1224) /gb=XM_001778961
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055

Domain Architecture

HSF_DNA-bind PF00447 908246
DomainStartEndBit scoreE-value
HSF_DNA-bind51218187.15e-53

Sequences