Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 916732

Identification

Species:
Arabidopsis lyrata
Gene model
916732
Description
scaffold_800132.1
Family
Jumonji
3D structure (top 5)
2OX0 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G46910.1 Score: 1

Carica papaya

evm.TU.supercontig_90.3 Score: 1

Oryza sativa subsp. japonica

LOC_Os10g42690.1 Score: 1

Populus trichocarpa

414287 Score: 1

Sorghum bicolor

5048994 Score: 1

Selaginella moellendorffii

81310 Score: 1

Vitis vinifera

GSVIVP00015690001 Score: 1

Zea mays

GRMZM2G060919_P02 Score: 1
GRMZM2G117538_P02 Score: 1

Expression data

Expressed Sequence Tags

At.55411
Arabidopsis thaliana transcription factor jumonji (jmj) family protein (AT5G46910) mRNA, complete cds /cds=p(1,2124) /gb=NM_124062
Os.7130
Oryza sativa Japonica Group cDNA clone:J033044E04, full insert sequence /cds=p(259,2835) /gb=AK073475

Domain Architecture

JmjN PF02375 916732
DomainStartEndBit scoreE-value
JmjN2356652.8e-16
JmjC199322183.65.7e-52
zf-C5HC241947260.75.4e-15

Sequences