Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: 93518

Identification

Species:
Selaginella moellendorffii
Gene model
93518
Description
e_gw1.14.413.1
Family
PHD
3D structure (top 5)
2RNO 1V66 2RNN
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

865811 Score: 1

Arabidopsis thaliana

AT5G60410.2 Score: 1.001
AT5G60410.1 Score: 1
AT5G60410.3 Score: 1
AT5G60410.4 Score: 1
AT5G60410.5 Score: 1

Chlorella sp. NC64A

52345 Score: 1

Carica papaya

evm.TU.supercontig_139.75 Score: 1

Coccomyxa sp. C-169

83729 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.996

Physcomitrella patens

159214 Score: 1

Sorghum bicolor

4893760 Score: 1

Vitis vinifera

GSVIVP00024500001 Score: 1

Zea mays

GRMZM2G155123_P02 Score: 1
GRMZM2G155123_P03 Score: 1

Expression data

Expressed Sequence Tags

At.43746
Arabidopsis thaliana SUMO E3 ligase (SIZ1) mRNA, complete cds /cds=p(240,2861) /gb=AY700572
Hv.17786
HO02A03S HO Hordeum vulgare cDNA clone HO02A03 5-PRIME, mRNA sequence /clone=HO02A03 /clone_end=5' /gb=CD054248
Os.4647
Oryza sativa Japonica Group cDNA clone:001-116-F09, full insert sequence /cds=p(251,2878) /gb=AK105290
Ppa.17984
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_159935) mRNA, complete cds /cds=p(1,2736) /gb=XM_001755074
Ppa.18513
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_159214) mRNA, complete cds /cds=p(1,2580) /gb=XM_001753766
Ppa.20502
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_165698) mRNA, complete cds /cds=p(1,3807) /gb=XM_001767479

Domain Architecture

SAP PF02037 93518
DomainStartEndBit scoreE-value
SAP23637.55.3e-08
PHD10015542.41.8e-09
zf-MIZ34739672.41.6e-18

Sequences