Details for gene 96394 - Plant Transcription Factor database

Species: Physcomitrella patens Gene model 96394 Description fgenesh1_pg.scaffold_302000018 Family CCAAT 3D structure (top 5) 1JFI 1N1J 2BYK 1KU5 1B67
	PDB entry:

JGI/DOE

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

493452 Score: 1

Arabidopsis thaliana

AT4G14540.1 Score: 1

Physcomitrella patens

36907 Score: 1
96394 Score: 1

Carica papaya

evm.TU.supercontig_12.154 Score: 1
evm.TU.supercontig_136.30 Score: 1

Micromonas pusilla CCMP1545

20274 Score: 1

Micromonas sp. RCC299

89813 Score: 1

Oryza sativa subsp. japonica

LOC_Os07g41580.1 Score: 1

Populus trichocarpa

247052 Score: 1

Sorghum bicolor

147956 Score: 1

Selaginella moellendorffii

38104 Score: 1

Vitis vinifera

GSVIVP00033366001 Score: 1

Zea mays

GRMZM2G082262_P01 Score: 1
GRMZM2G082262_P02 Score: 1

At.21494: Arabidopsis thaliana CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family (Hap3b) (AT5G47640) mRNA, complete cds /cds=p(188,760) /gb=NM_124138
At.24820: Arabidopsis thaliana ATHAP3/ATNF-YB1/HAP3/HAP3A (NUCLEAR FACTOR Y SUBUNIT B1); transcription factor (ATHAP3/ATNF-YB1/HAP3/HAP3A) mRNA, complete cds /cds=p(102,524) /gb=NM_179974
At.28391: Arabidopsis thaliana CCAAT-box binding transcription factor, putative (AT2G37060) mRNA, complete cds /cds=p(162,683) /gb=NM_001036423
At.33269: 03-L022243-065-008-C01-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 008-C01, mRNA sequence /clone=008-C01 /gb=DR751487
At.35203: Arabidopsis thaliana transcription factor (AT3G53340) mRNA, complete cds /cds=p(135,665) /gb=NM_115194
Hv.26941: Hordeum vulgare subsp. vulgare cDNA clone: FLbaf86i15, mRNA sequence /gb=AK250539
Mtr.10804: EST669970 MTUS Medicago truncatula cDNA clone MTUS-18B7, mRNA sequence /clone=MTUS-18B7 /gb=CF069249
Mtr.466: EST1225664 MTY Medicago truncatula cDNA clone MTYAK54, mRNA sequence /clone=MTYAK54 /gb=DW016703
Os.27839: Oryza sativa Japonica Group cDNA clone:J023121O11, full insert sequence /cds=p(253,810) /gb=AK100811
Os.49770: Oryza sativa (indica cultivar-group) HAP3-like transcriptional-activator (HAP3a) mRNA, complete cds /cds=p(1054,1713) /gb=AY062181
Os.49795: Oryza sativa Japonica Group cDNA clone:002-139-C11, full insert sequence /cds=p(76,750) /gb=AK112118
Pba.737: WS02518.B21_K05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02518_K05 3', mRNA sequence /clone=WS02518_K05 /clone_end=3' /gb=CV243355
Ppa.17867: DC957411 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. patens cDNA clone ppgs24e16 3', mRNA sequence /clone=ppgs24e16 /clone_end=3' /gb=DC957411
Ppa.7249: BY947709 ppls full-length cDNA library Physcomitrella patens subsp. patens cDNA clone PPLS023F15 5', mRNA sequence /clone=PPLS023F15 /clone_end=5' /gb=BY947709
Pth.12515: UM63TC12.3pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM63TC12 3', mRNA sequence /clone=UM63TC12 /clone_end=3' /gb=DN491129
Pth.13511: WS0163.B21_E08 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_E08 3', mRNA sequence /clone=WS0163_E08 /clone_end=3' /gb=CV226095
Pth.2579: WS0161.B21_D19 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_D19 3', mRNA sequence /clone=WS0161_D19 /clone_end=3' /gb=CV225383
Vvi.10309: C1G05586 Mixture of buds, little clusters and fruits (C1) Vitis vinifera cDNA clone C1G05586, mRNA sequence /clone=C1G05586 /gb=EE062969
Vvi.17625: WIN0544.C21_K11 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0544_K11 3', mRNA sequence /clone=WIN0544_K11 /clone_end=3' /gb=EC948432
Vvi.6634: EST 2134 Green Grape berries Lambda Zap II Library Vitis vinifera cDNA clone GT203H05 3', mRNA sequence /clone=GT203H05 /clone_end=3' /gb=BQ799965

Domain	Start	End	Bit score	E-value
CBFD_NFYB_HMF	38	103	131.9	1.9e-36
NF-YB	40	127	224.7	3.4e-67

protein sequence
transcript sequence

Gene model: 96394

Identification

Genome Databases

Orthologs and co-orthologs (in-paralogs)