Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G01920.2

Identification

Species:
Arabidopsis thaliana
Locus
AT1G01920
Gene model
AT1G01920.2
Description
SET domain-containing protein
Family
SET
3D structure (top 5)
2H21
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

470083 Score: 1

Arabidopsis thaliana

AT1G01920.1 Score: 1
AT1G01920.2 Score: 0.927

Micromonas pusilla CCMP1545

50859 Score: 1

Arabidopsis thaliana

AT1G01920.2 Score: 1
AT1G01920.1 Score: 0.979

Arabidopsis thaliana

AT1G01920.2 Score: 1
AT1G01920.1 Score: 0.979

Arabidopsis thaliana

AT1G01920.2 Score: 1
AT1G01920.1 Score: 0.962

Oryza sativa subsp. japonica

LOC_Os06g03676.1 Score: 1

Arabidopsis thaliana

AT1G01920.2 Score: 1
AT1G01920.1 Score: 0.979

Physcomitrella patens

123452 Score: 1

Arabidopsis thaliana

AT1G01920.1 Score: 1
AT1G01920.2 Score: 0.904

Selaginella moellendorffii

52721 Score: 1

Arabidopsis thaliana

AT1G01920.2 Score: 1
AT1G01920.1 Score: 0.971

Arabidopsis thaliana

AT1G01920.2 Score: 1
AT1G01920.1 Score: 0.949

Vitis vinifera

GSVIVP00026746001 Score: 1

Arabidopsis thaliana

AT1G01920.2 Score: 1
AT1G01920.1 Score: 0.963

Zea mays

GRMZM2G078458_P01 Score: 1
GRMZM2G078458_P03 Score: 1
GRMZM2G078458_P02 Score: 0.977

Chlamydomonas reinhardtii

142793 Score: 1

Arabidopsis thaliana

AT1G01920.1 Score: 1
AT1G01920.2 Score: 0.926

Expression data

Expressed Sequence Tags

At.42629
Arabidopsis thaliana SET domain-containing protein (AT1G01920) mRNA, complete cds /cds=p(18,1736) /gb=NM_100072
Os.44812
Oryza sativa Japonica Group cDNA clone:J033110L01, full insert sequence /gb=AK122004
Vvi.16518
CAbud0001_IIIR_F07 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0001_IIIR_F07 3', mRNA sequence /clone=CAbud0001_IIIR_F07 /clone_end=3' /gb=CF510936

Domain Architecture

SET PF00856 AT1G01920.2
DomainStartEndBit scoreE-value
SET11308177.53.4e-50

Sequences