Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: AT1G04990.2

Identification

Species:
Arabidopsis thaliana
Locus
AT1G04990
Gene model
AT1G04990.2
Description
zinc finger (CCCH-type) family protein
Family
C3H
3D structure (top 5)
1M9O 2D9N 2E5S 2RHK 2RPP
PDB entry:

Genome Databases

External resources

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

878662 Score: 1

Arabidopsis thaliana

AT1G04990.1 Score: 1
AT1G04990.2 Score: 1

Arabidopsis thaliana

AT1G04990.1 Score: 1
AT1G04990.2 Score: 1

Carica papaya

evm.TU.supercontig_346.1 Score: 1

Populus trichocarpa

552730 Score: 1

Arabidopsis thaliana

AT1G04990.1 Score: 1
AT1G04990.2 Score: 1

Arabidopsis thaliana

AT1G04990.1 Score: 1
AT1G04990.2 Score: 1

Vitis vinifera

GSVIVP00025958001 Score: 1

Expression data

Expressed Sequence Tags

At.11296
Arabidopsis thaliana zinc finger protein 2 (zfn2) mRNA, complete cds /cds=p(1,1362) /gb=AF138744
At.21743
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT1G04990) mRNA, complete cds /cds=p(336,1550) /gb=NM_100378
Mtr.9480
EST484528 GVN Medicago truncatula cDNA clone pGVN-70P3 5' end, mRNA sequence /clone=pGVN-70P3 /clone_end=5' /gb=BG582782
Vvi.19281
WIN0543.C21_B18 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0543_B18 3', mRNA sequence /clone=WIN0543_B18 /clone_end=3' /gb=EC947915

Domain Architecture

zf-CCCH PF00642 AT1G04990.2
DomainStartEndBit scoreE-value
zf-CCCH487442.11.9e-09
zf-CCCH9111740.56e-09
zf-CCCH13616244.44e-10
zf-CCCH26228842.61.4e-09
zf-CCCH30833436.21.1e-07

Sequences